limfuxing / ruvIIInbLinks
This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial model. Thus far, the package has been applied to remove unwanted variation from single-cell RNA-seq and shotgun metagenomics data. The package takes raw sequencing count as input and thus in principle can be appli…
☆18Updated last year
Alternatives and similar repositories for ruvIIInb
Users that are interested in ruvIIInb are comparing it to the libraries listed below
Sorting:
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆22Updated 2 years ago
- scover☆24Updated 2 years ago
- ☆41Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- ☆23Updated last year
- SCASA: Single cell transcript quantification tool☆22Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Single-cell RNA Processing Software☆11Updated 5 months ago
- Identify and correct invalid gene symbols☆60Updated last year
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 7 months ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Updated last year
- An R for fast and flexible DNA methylation analysis☆34Updated last month
- R package for Flexible dot plots☆29Updated 3 years ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆43Updated 4 years ago
- binned motif enrichment analysis and visualisation☆43Updated 3 weeks ago
- Exon-Intron Split Analysis (EISA) in R☆17Updated 2 weeks ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 6 months ago