limfuxing / ruvIIInbLinks
This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial model. Thus far, the package has been applied to remove unwanted variation from single-cell RNA-seq and shotgun metagenomics data. The package takes raw sequencing count as input and thus in principle can be appli…
☆18Updated last year
Alternatives and similar repositories for ruvIIInb
Users that are interested in ruvIIInb are comparing it to the libraries listed below
Sorting:
- Bead-based single-cell atac processing☆33Updated 4 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Updated 2 years ago
- Lightweight Iterative Gene set Enrichment in R☆58Updated last year
- R package for Flexible dot plots☆29Updated 3 years ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- Identify and correct invalid gene symbols☆62Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- Single Cell RNA PolyA Site Discovery☆11Updated last week
- Exon-Intron Split Analysis (EISA) in R☆17Updated 3 months ago
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- ☆42Updated 3 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated last year
- ☆23Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- binned motif enrichment analysis and visualisation☆45Updated last week
- Human brain, >200,000 nuclei☆23Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- ☆43Updated 5 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 4 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- An R Package for Geneset Enrichment Workflows☆78Updated last month
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- scover☆24Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Clone identification from single-cell data☆61Updated 3 years ago
- Normalize CITEseq Data☆67Updated 2 months ago
- An R package to interpret biological trends from DNA methylation data☆18Updated 3 years ago