muhligs / miReactLinks
Estimate microRNA activity in single cells
☆13Updated 3 years ago
Alternatives and similar repositories for miReact
Users that are interested in miReact are comparing it to the libraries listed below
Sorting:
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆70Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Updated 3 years ago
- Repository for Cibersortx☆62Updated 4 years ago
- ☆65Updated 6 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆27Updated 3 years ago
- ☆85Updated last year
- Unified access to several second-generation deconvolution methods☆91Updated last month
- R package for Pathway RespOnsive GENe activity inference☆114Updated 3 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆40Updated 4 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆116Updated 9 months ago
- Mollecular Functional Portraits☆43Updated last year
- Draw phylogenetic trees of tumor evolution☆87Updated 2 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆73Updated 4 years ago
- Code repository for single cell RNA-seq☆40Updated 5 years ago
- ☆75Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 9 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- Identify genes with spatial expression trends in single-cell gene expression data☆51Updated 7 years ago
- Gene group activity utility functions for Scanpy☆100Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆48Updated 2 years ago
- Predict RNA velocity through deep learning☆72Updated 2 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- R package for semi-supervised single-cell data integration☆95Updated 2 weeks ago
- scGSVA: Perform GSVA for single cell RNA seq☆70Updated last week
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated this week
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆98Updated 8 months ago
- Bostongene cell deconvolution algorithm from RNAseq☆60Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Updated 3 years ago
- ☆46Updated 3 years ago