adoebley / GriffinLinks
A flexible framework for nucleosome profiling of cell-free DNA
☆27Updated 2 years ago
Alternatives and similar repositories for Griffin
Users that are interested in Griffin are comparing it to the libraries listed below
Sorting:
- ☆31Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆39Updated 5 years ago
- Collection of fragmentomic analysis scripts☆11Updated last year
- Clinical interpretation of somatic mutations in cancer☆48Updated 7 months ago
- Scripts for analyses in the Griffin manuscript☆11Updated 2 years ago
- ☆50Updated 3 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 10 months ago
- An R package for predicting HR deficiency from mutation contexts☆29Updated 8 months ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15Updated 4 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- cfDNA cell type of origin estimation☆32Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- An R package to time somatic mutations☆64Updated 4 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- ☆21Updated this week
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- ☆39Updated 3 months ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- ☆36Updated 6 years ago
- Tumor Mutational Burden☆61Updated 2 months ago
- ☆46Updated 2 years ago
- MutSig2CV from Lawrence et al. 2014☆32Updated 5 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago