nebiolabs / EM-seqLinks
Tools and Data related to Enzymatic Methylation Sequencing
☆30Updated 2 weeks ago
Alternatives and similar repositories for EM-seq
Users that are interested in EM-seq are comparing it to the libraries listed below
Sorting:
- ☆49Updated 3 years ago
- BISulfite-seq CUI Toolkit☆26Updated this week
- ☆22Updated 2 months ago
- Find and characterise transposable element insertions☆20Updated 2 years ago
- QDNAseq package for Bioconductor☆54Updated last year
- ☆75Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Tools for analyzing DNA methylation data☆44Updated 3 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Updated 8 months ago
- BISulfite-seq CUI Toolkit☆70Updated 4 months ago
- Allele-specific alignment sorting☆61Updated 3 years ago
- Genomic Association Tester☆35Updated 2 years ago
- ☆39Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 5 years ago
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 11 months ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆32Updated 3 years ago
- ☆53Updated 3 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Updated 3 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated 2 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 8 months ago
- Concordance and contamination estimator for tumor–normal pairs☆59Updated last year
- tools to find circRNAs in RNA-seq data☆45Updated 8 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- ☆29Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆44Updated 4 years ago