waldronlab / BiocNYCLinks
Materials presented at the BiocNYC meet-up
☆12Updated 7 years ago
Alternatives and similar repositories for BiocNYC
Users that are interested in BiocNYC are comparing it to the libraries listed below
Sorting:
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated last week
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 4 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 7 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated this week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- GEO RNA-seq Experiments Processing Pipeline☆22Updated 6 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Code for EpiMap data browser☆14Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- A simple, intuitive and Efficient single cell binary Data Storage format☆15Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- DriverPower☆26Updated 10 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- ☆17Updated last year
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago