Materials presented at the BiocNYC meet-up
☆12Nov 29, 2018Updated 7 years ago
Alternatives and similar repositories for BiocNYC
Users that are interested in BiocNYC are comparing it to the libraries listed below
Sorting:
- a modified version of FunSeq2 using new data context☆15Aug 18, 2022Updated 3 years ago
- Utility functions to extend and optimize GenomicRanges functionality.☆10Mar 6, 2025Updated 11 months ago
- Analyse enhancer strength based on MPRA experiments.☆12Nov 12, 2020Updated 5 years ago
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated 6 months ago
- A public list of computational methods for cell type inference from genome-scale DNA methylation data☆13Mar 26, 2019Updated 6 years ago
- ATAC_seq Workshop☆13Feb 16, 2018Updated 8 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆41Feb 22, 2022Updated 4 years ago
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- JEME method for predicting enhancer targets☆11Jul 15, 2017Updated 8 years ago
- SV☆14May 3, 2018Updated 7 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Aug 19, 2020Updated 5 years ago
- Formatter for R☆14Nov 10, 2023Updated 2 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆19May 26, 2025Updated 9 months ago
- Read HOMER motif analysis output in R.☆17Mar 1, 2018Updated 8 years ago
- ☆17Jan 3, 2019Updated 7 years ago
- Minimal genome browser library created with TnT☆19Nov 22, 2017Updated 8 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- A framework for network analysis and display of SNPs☆19Oct 31, 2016Updated 9 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Apr 25, 2023Updated 2 years ago
- Perform inference on algorithm-agnostic variable importance☆24Sep 25, 2025Updated 5 months ago
- A flexible framework for nucleosome profiling of cell-free DNA☆29Jul 27, 2023Updated 2 years ago
- Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data☆26May 15, 2024Updated last year
- Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization☆15Sep 18, 2025Updated 5 months ago
- UZH BIO392: Bioinformatics of Sequence Variation Course Repository☆13May 12, 2025Updated 9 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Aug 17, 2016Updated 9 years ago
- An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.☆26Jun 1, 2023Updated 2 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆35Jan 6, 2025Updated last year
- Scripts and files for the annual Short Read Analysis Workshop☆12Jul 21, 2025Updated 7 months ago
- Scalable RNA-seq analysis☆73Jan 12, 2021Updated 5 years ago
- ☆36Feb 1, 2022Updated 4 years ago
- Toolbox with R scripts☆38Sep 21, 2018Updated 7 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- Bioconnector Workshops☆32Dec 10, 2018Updated 7 years ago
- Wes Anderson palettes for javascript☆35May 3, 2018Updated 7 years ago
- Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!☆13Sep 12, 2025Updated 5 months ago
- Late nights, long commits, quiet focus. A colorscheme for performance.☆14Jan 18, 2026Updated last month
- Build SVG Custom User Interface in R, rmd, qmd and Shiny☆20Apr 10, 2025Updated 10 months ago
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 3 months ago
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago