waldronlab / BiocNYCLinks
Materials presented at the BiocNYC meet-up
☆12Updated 7 years ago
Alternatives and similar repositories for BiocNYC
Users that are interested in BiocNYC are comparing it to the libraries listed below
Sorting:
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 5 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 7 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Code for EpiMap data browser☆14Updated last year
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Machine learning use cases for teaching☆13Updated 8 years ago
- DriverPower☆26Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆27Updated 3 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- Gene-level general linear mixed model☆24Updated 4 months ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆30Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 4 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Updated 4 months ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- Model-based tumour subclonal deconvolution using population genetics☆34Updated 2 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- An R Package for Geneset Enrichment Workflows☆79Updated last month
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- countsimQC - Compare characteristic features of count data sets☆30Updated this week
- interactive plots for differential expression analysis☆34Updated 7 months ago
- Flexible Bayesian inference of mutational signatures☆41Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆29Updated 2 years ago