waldronlab / BiocNYC
Materials presented at the BiocNYC meet-up
☆12Updated 6 years ago
Alternatives and similar repositories for BiocNYC:
Users that are interested in BiocNYC are comparing it to the libraries listed below
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Integrating zingeR with ZINB-WaVE weights☆23Updated 7 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 6 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated 3 months ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 2 months ago
- Read HOMER motif analysis output in R.☆15Updated 6 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- Collection of R functions used in the Hochwagen Lab☆11Updated 2 years ago
- Code for EpiMap data browser☆14Updated 8 months ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- ☆17Updated 9 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 8 months ago
- pipelines to process scRNA-seq data☆11Updated 4 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 8 months ago
- Workshop for CNV analysis with Bioconductor☆17Updated last month