hw538 / cfDNAProLinks
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
☆34Updated last month
Alternatives and similar repositories for cfDNAPro
Users that are interested in cfDNAPro are comparing it to the libraries listed below
Sorting:
- Tumor Mutational Burden☆61Updated 3 weeks ago
- ☆30Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- cfDNA cell type of origin estimation☆31Updated last year
- ☆74Updated 4 years ago
- Tools for analyzing DNA methylation data☆43Updated last week
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- ☆38Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- ☆71Updated 2 years ago
- QDNAseq package for Bioconductor☆50Updated last year
- R package to work with ctDNA sequencing data☆43Updated 3 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- An R interface to the MEME Suite☆52Updated 2 months ago
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆61Updated 2 weeks ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated 3 weeks ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 6 months ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 9 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- A continually expanding collection of RNA-seq tools☆51Updated 10 months ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15Updated 3 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- ☆21Updated last week
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Updated 2 months ago