Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA
☆80Jul 22, 2020Updated 5 years ago
Alternatives and similar repositories for cfDNA
Users that are interested in cfDNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cfDNA analysis workflow☆23Jun 15, 2023Updated 3 years ago
- ☆78Jun 4, 2021Updated 5 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆82Aug 18, 2022Updated 3 years ago
- cfDNA cell type of origin estimation☆35Oct 19, 2023Updated 2 years ago
- R package for CRAG☆12Feb 17, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆43Jun 29, 2026Updated 3 weeks ago
- Inferring expressed genes by whole-genome sequencing of plasma DNA☆19May 23, 2016Updated 10 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- ☆11Jun 14, 2023Updated 3 years ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- Pattern Recognition for Cell-free DNA☆59Aug 3, 2018Updated 7 years ago
- Profiling of transcription factor binding sites in cell-free DNA☆27Apr 9, 2020Updated 6 years ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆31Jul 27, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R package to work with ctDNA sequencing data☆47Feb 20, 2022Updated 4 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Mar 27, 2020Updated 6 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆214Mar 20, 2024Updated 2 years ago
- Scripts for analyses in the Griffin manuscript☆12Dec 14, 2022Updated 3 years ago
- ☆33Mar 5, 2024Updated 2 years ago
- FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.☆41Updated this week
- Collection of fragmentomic analysis scripts☆14Jul 3, 2024Updated 2 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆38Sep 16, 2025Updated 10 months ago
- Updated DANPOS2 to work with python3☆24May 14, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆25Jan 18, 2022Updated 4 years ago
- ☆10Nov 18, 2022Updated 3 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆195Apr 19, 2026Updated 3 months ago
- ☆18Jun 3, 2020Updated 6 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- ☆17May 25, 2026Updated last month
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆17Updated this week
- 一个中文基因数据库 面向专业人员也面向普通大众☆15Sep 20, 2018Updated 7 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆53Jan 4, 2023Updated 3 years ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Apr 6, 2022Updated 4 years ago
- BISulfite-seq CUI Toolkit☆70Updated this week
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 10 months ago
- NEAT read simulation tools☆101Jun 22, 2022Updated 4 years ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆46Apr 24, 2024Updated 2 years ago