Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
☆208Mar 20, 2024Updated 2 years ago
Alternatives and similar repositories for ichorCNA
Users that are interested in ichorCNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆32Mar 5, 2024Updated 2 years ago
- ☆77Jun 4, 2021Updated 4 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆159Feb 12, 2026Updated 2 months ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆44Jul 28, 2021Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Apr 20, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated 2 months ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆80Aug 18, 2022Updated 3 years ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆16Apr 2, 2019Updated 7 years ago
- ASCAT R package☆199Feb 12, 2026Updated 2 months ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- ☆55Mar 9, 2022Updated 4 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- Copy number calling and variant classification using targeted short read sequencing☆146Feb 19, 2026Updated 2 months ago
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A flexible framework for nucleosome profiling of cell-free DNA☆29Jul 27, 2023Updated 2 years ago
- ☆78Jul 12, 2023Updated 2 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆77Sep 12, 2024Updated last year
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- Tools for working with genomic and high throughput sequencing data.☆365Apr 23, 2026Updated 2 weeks ago
- call copy number from WES(WXS)☆11May 10, 2021Updated 4 years ago
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆78Jul 22, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Apr 21, 2026Updated 2 weeks ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- ☆26Aug 8, 2024Updated last year
- Scripts used for the ACT paper☆12May 6, 2021Updated 5 years ago
- Workflow for Sequenza, cellularity and ploidy☆27Aug 19, 2025Updated 8 months ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Mar 23, 2025Updated last year
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆116Apr 2, 2025Updated last year
- R package to work with ctDNA sequencing data☆47Feb 20, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆846May 2, 2026Updated last week
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Apr 8, 2022Updated 4 years ago
- Scripts for analyses in the Griffin manuscript☆12Dec 14, 2022Updated 3 years ago
- ☆16Jun 27, 2025Updated 10 months ago
- WisecondorX — An evolved WISECONDOR☆114Apr 13, 2026Updated 3 weeks ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆115Oct 13, 2023Updated 2 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Jan 15, 2020Updated 6 years ago