broadinstitute / ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
☆168Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for ichorCNA
- ASCAT R package☆170Updated 3 weeks ago
- A structural variation pipeline for short-read sequencing☆172Updated this week
- ☆103Updated last year
- VarDict☆188Updated 10 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆142Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆137Updated last year
- ☆141Updated 2 years ago
- Annotates variants in MAF with OncoKB annotation.☆123Updated last month
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆134Updated this week
- ENCODE Uniform processing pipeline for ChIP-seq☆120Updated 4 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆93Updated 3 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆137Updated last year
- ☆71Updated 6 months ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆233Updated last month
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆208Updated 5 months ago
- A short tutorial on how to use RSEM☆134Updated 4 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆121Updated 3 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆104Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆94Updated 3 years ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆154Updated this week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆199Updated this week
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆153Updated 3 months ago
- Precision HLA typing from next-generation sequencing data☆190Updated 8 months ago
- Detecting sites of genomic enrichment☆187Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆233Updated last month
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆154Updated last year
- Check strandedness of RNA-Seq fastq files☆115Updated 2 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆140Updated 2 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆94Updated 7 months ago
- ☆116Updated last year