gersteinlab / exceRptLinks
Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets
☆23Updated 2 years ago
Alternatives and similar repositories for exceRpt
Users that are interested in exceRpt are comparing it to the libraries listed below
Sorting:
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- R package wrapping bedtools☆44Updated 8 months ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- An R for fast and flexible DNA methylation analysis☆34Updated last month
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- ☆41Updated 3 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 6 months ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- Identify and correct invalid gene symbols☆60Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆93Updated 2 weeks ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated 2 weeks ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆16Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- workshop website on readthedocs☆21Updated last month
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- A tidy interface for coverage analysis☆31Updated 5 years ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆20Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Single Cell Analysis Automated Workflow☆28Updated 2 years ago
- ☆41Updated 7 years ago
- DriverPower☆26Updated 10 months ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Molecular Signatures Database (MSigDB) in a tidy data frame☆26Updated this week