hoffmangroup / polyidusLinks
Polyidus provides a framework to catch chimeric DNA sequences with a tale of python
☆9Updated last year
Alternatives and similar repositories for polyidus
Users that are interested in polyidus are comparing it to the libraries listed below
Sorting:
- ☆22Updated 6 months ago
- Immuological gene typing and annotation for genome assembly☆37Updated 3 months ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Location of public benchmarking; primarily final results☆18Updated 4 months ago
- ☆19Updated 2 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 11 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- ☆23Updated 4 years ago
- ☆36Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 11 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 3 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 4 months ago
- Reconstruction of focal amplifications with long reads☆21Updated last week
- Useful tools for working with Salmon output☆38Updated 5 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated last month
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Version II of Mandalorion☆32Updated 6 years ago
- Third-generation fusion gene detection☆14Updated last year
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Enabling differential allele-specific analysis☆11Updated 5 months ago
- alternative splicing analysis pipeline☆19Updated 4 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- ☆28Updated 6 months ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Updated 3 years ago