bioinf / caller_benchmarkLinks
Companion repository for the human variant calling pipeline comparison paper
☆11Updated 3 years ago
Alternatives and similar repositories for caller_benchmark
Users that are interested in caller_benchmark are comparing it to the libraries listed below
Sorting:
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Collection of fragmentomic analysis scripts☆12Updated last year
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- DriverPower☆26Updated last year
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 7 months ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- ☆26Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆30Updated last week
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- Genomic Association Tester☆35Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- Genomic data interpretation and visualization Workshop☆21Updated 2 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆31Updated 10 months ago
- The Zavolab Automated RNA-seq Pipeline☆36Updated last week
- Gene Fusion Visualiser☆51Updated 3 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Updated 2 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- Python module and utility programs for working with GFF files☆33Updated 5 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago