adoebley / Griffin_analysesLinks
Scripts for analyses in the Griffin manuscript
☆11Updated 2 years ago
Alternatives and similar repositories for Griffin_analyses
Users that are interested in Griffin_analyses are comparing it to the libraries listed below
Sorting:
- A flexible framework for nucleosome profiling of cell-free DNA☆27Updated last year
- ☆28Updated last year
- A Nextflow workflow for HLA typing using HLA-HD☆11Updated 11 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 4 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 4 months ago
- Collection of fragmentomic analysis scripts☆11Updated 11 months ago
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆31Updated last week
- Comprehensive analysis of small RNA sequencing data☆31Updated 3 weeks ago
- ☆34Updated 5 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 3 months ago
- hands-on for NGS/SNParray CNV call trainning☆17Updated 2 years ago
- DriverPower☆26Updated 4 months ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Irons out wrinkles in noisy coverage data using robust PCA☆14Updated 3 weeks ago
- Clinical interpretation of somatic mutations in cancer☆45Updated 3 months ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Updated 2 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- ☆24Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 10 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.☆23Updated last week