adoebley / Griffin_analyses
Scripts for analyses in the Griffin manuscript
☆11Updated 2 years ago
Alternatives and similar repositories for Griffin_analyses:
Users that are interested in Griffin_analyses are comparing it to the libraries listed below
- A flexible framework for nucleosome profiling of cell-free DNA☆27Updated last year
- ☆28Updated last year
- Collection of fragmentomic analysis scripts☆11Updated 9 months ago
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆30Updated 3 weeks ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 3 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- R package to work with ctDNA sequencing data☆39Updated 3 years ago
- Clinical interpretation of somatic mutations in cancer☆45Updated 2 months ago
- ☆33Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Irons out wrinkles in noisy coverage data using robust PCA☆14Updated last week
- A Nextflow workflow for HLA typing using HLA-HD☆11Updated 9 months ago
- R package for CRAG☆11Updated 2 months ago
- DriverPower☆26Updated 3 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 2 months ago
- FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.☆22Updated 2 weeks ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- ☆23Updated 3 years ago
- Comprehensive analysis of small RNA sequencing data☆31Updated 10 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 9 months ago
- hands-on for NGS/SNParray CNV call trainning☆17Updated 2 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Repository for the Anczukow-Lab splicing pipeline☆15Updated last month
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 8 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated 2 years ago