Scripts for analyses in the Griffin manuscript
☆12Dec 14, 2022Updated 3 years ago
Alternatives and similar repositories for Griffin_analyses
Users that are interested in Griffin_analyses are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A flexible framework for nucleosome profiling of cell-free DNA☆31Jul 27, 2023Updated 2 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆19Jun 5, 2026Updated last month
- An et al. Nature Communications 2023☆15Jan 19, 2023Updated 3 years ago
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆43Jun 29, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆33Mar 5, 2024Updated 2 years ago
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 10 months ago
- ☆17May 25, 2026Updated 2 months ago
- bisulfite sequencing pipeline from fastq to methylation reports☆13Updated this week
- ☆13Feb 16, 2022Updated 4 years ago
- R package to work with ctDNA sequencing data☆47Feb 20, 2022Updated 4 years ago
- ☆78Jun 4, 2021Updated 5 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆80Jul 22, 2020Updated 6 years ago
- A straightforward and complete next-generation sequencing read simulator☆22Feb 18, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 10 months ago
- Materials for GCB535 at Penn.☆21Apr 19, 2019Updated 7 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- quickly filter fastq files by matching sequences to a set of regex patterns☆60Apr 18, 2026Updated 3 months ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆214Mar 20, 2024Updated 2 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Apr 9, 2020Updated 6 years ago
- LaTeX templates for UCSC thesis and/or advancement (thesis proposal)☆17Dec 5, 2020Updated 5 years ago
- Deep learning reveals predictive sequence concepts within immune repertoires to immunotherapy☆15Sep 17, 2022Updated 3 years ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scripts with all the steps to create the RStudio Server image from DigitalOcean Marketplace☆10Feb 28, 2021Updated 5 years ago
- ☆16Dec 19, 2016Updated 9 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 2 weeks ago
- Source code for integrative nonnegative matrix factorization☆19Jul 12, 2018Updated 8 years ago
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated last year
- Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq☆19Dec 6, 2022Updated 3 years ago
- Python library to interact with smartsheets☆28Dec 31, 2022Updated 3 years ago
- This repository contains a course on Power BI that will take a complete Power BI novice to a level of business proficiency. Power BI is n…☆28May 29, 2022Updated 4 years ago
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.☆29May 7, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GUI for inspecting POD5 files☆35Dec 19, 2024Updated last year
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆29Apr 24, 2026Updated 3 months ago
- Profiling of transcription factor binding sites in cell-free DNA☆27Apr 9, 2020Updated 6 years ago
- Hardware Acceleration of Banded Smith-Waterman Algorithm on an FPGA using Systolic array based architecture.☆12Nov 26, 2022Updated 3 years ago
- This repository contains the source code for the Semantic Knowledge Extractor Tool (SKET). SKET is an unsupervised hybrid knowledge extra…☆13Apr 18, 2023Updated 3 years ago
- Genome-wide reconstruction of complex structural variants☆39Jun 21, 2022Updated 4 years ago
- Released code for the paper 'End-to-end Multiple Instance Learning for Whole-Slide Cytopathology of Urothelial Carcinoma'☆10Nov 24, 2021Updated 4 years ago