Alternatives and similar repositories for Griffin_analyses

Users that are interested in Griffin_analyses are comparing it to the libraries listed below

• adoebley / Griffin
  A flexible framework for nucleosome profiling of cell-free DNA
  ☆28Updated 2 years ago
• astrazeneca-cgr-publications / JARVIS
  JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
  ☆24Updated last year
• pughlab / fragmentomics
  Collection of fragmentomic analysis scripts
  ☆12Updated last year
• gagneurlab / absplice
  ☆39Updated 6 months ago
• WGLab / CancerVar
  Clinical interpretation of somatic mutations in cancer
  ☆50Updated 11 months ago
• cancer-genomics / reproduce_lucas_wflow
  ☆31Updated last year
• yuchaojiang / CODEX2
  Full-spectrum copy number variation detection by high-throughput DNA sequencing
  ☆40Updated 4 years ago
• cancerit / alleleCount
  Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…
  ☆44Updated 3 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆41Updated 3 years ago
• rschwess / tutorial_dl_for_genomics
  A short tutorial to using DL and keras for genomics with sequence data.
  ☆15Updated 5 years ago
• ShujiaHuang / qmplot
  A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.
  ☆48Updated 2 years ago
• epigen / LIQUORICE
  A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies
  ☆10Updated 2 years ago
• kircherlab / cfDNA
  cfDNA analysis workflow
  ☆23Updated 2 years ago
• gxiaolab / mountainClimber
  ☆20Updated 6 years ago
• caravagnalab / mobster
  Model-based tumour subclonal deconvolution using population genetics
  ☆33Updated 2 months ago
• skandlab / SMuRF
  ☆22Updated 11 months ago
• lkuchenb / MultiHLA
  WES HLA Typing based on multiple alternative tools
  ☆18Updated 4 years ago
• ndbrown6 / MSK-GRAIL-TECHVAL
  High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
  ☆22Updated 5 years ago
• astrazeneca-cgr-publications / PEACOK
  Phenome Exome Association and Correlation Of Key phenotypes
  ☆31Updated 4 years ago
• jiujiezz / tsnad
  Detecting somatic mutations and predicting tumor-specific neo-antigens
  ☆29Updated 4 years ago
• TRON-Bioinformatics / tronflow-hla-hd
  A Nextflow workflow for HLA typing using HLA-HD
  ☆14Updated last year
• parklab / MuSiCal
  A comprehensive toolkit for mutational signature analysis
  ☆41Updated last year
• TRON-Bioinformatics / EasyFuse
  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
  ☆64Updated last week
• murphycj / AGFusion
  Python package to annotate and visualize gene fusions.
  ☆65Updated last year
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆56Updated 3 months ago
• griffithlab / DeepSVR
  ☆51Updated 6 years ago
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆42Updated last year
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆26Updated 5 months ago
• getzlab / MutSig2CV
  MutSig2CV from Lawrence et al. 2014
  ☆33Updated 5 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated this week