R package for CRAG
☆12Feb 17, 2025Updated last year
Alternatives and similar repositories for cragr
Users that are interested in cragr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17May 25, 2026Updated 2 months ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆80Jul 22, 2020Updated 6 years ago
- An et al. Nature Communications 2023☆15Jan 19, 2023Updated 3 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆31Jul 27, 2023Updated 3 years ago
- FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.☆42Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆82Aug 18, 2022Updated 3 years ago
- exRNA Biomarker Discovery for Liquid Biopsy☆11Oct 29, 2020Updated 5 years ago
- Collection of fragmentomic analysis scripts☆14Jul 3, 2024Updated 2 years ago
- ☆11Jun 14, 2023Updated 3 years ago
- ☆78Jun 4, 2021Updated 5 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆14Jul 22, 2026Updated last week
- Optimized DMR analysis based on bimodal normal distribution model and cost function for regional methylation analysis.☆17Sep 13, 2021Updated 4 years ago
- cfDNA analysis workflow☆23Jun 15, 2023Updated 3 years ago
- ☆10Sep 14, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆12Aug 4, 2020Updated 5 years ago
- DMR Identification Tool☆34Jul 6, 2023Updated 3 years ago
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 2 years ago
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 3 years ago
- Utility functions for FACETS☆40Oct 24, 2025Updated 9 months ago
- official repository for the UEA sRNA Workbench☆10May 31, 2023Updated 3 years ago
- Bioinformatics projects and code shared by Zhi John Lu☆10Jun 3, 2021Updated 5 years ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago
- ☆27Aug 8, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Java Bindings (JNI) for bwa☆20Dec 15, 2016Updated 9 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated 3 weeks ago
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆43Jun 29, 2026Updated last month
- A set of scripts and functions for analyzing MeDIP-seq datasets☆16Feb 3, 2026Updated 5 months ago
- Profiling of transcription factor binding sites in cell-free DNA☆27Apr 9, 2020Updated 6 years ago
- R package and Shiny app providing functions for scaling relative copy number to absolute values for shallow whole genome sequencing of ca…☆12Aug 29, 2025Updated 11 months ago
- ☆33Mar 5, 2024Updated 2 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆163Feb 12, 2026Updated 5 months ago
- Fork of https://code.google.com/p/ngs-analysis☆17Sep 14, 2013Updated 12 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆38Sep 16, 2025Updated 10 months ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆21Nov 3, 2021Updated 4 years ago
- A simple and performant API for working with many genomic file formats in a consistent fashion☆16Mar 23, 2018Updated 8 years ago
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆17Feb 22, 2022Updated 4 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆22May 8, 2017Updated 9 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆196Apr 19, 2026Updated 3 months ago
- ☆25Jan 18, 2022Updated 4 years ago