epifluidlab / cragrLinks
R package for CRAG
☆11Updated 10 months ago
Alternatives and similar repositories for cragr
Users that are interested in cragr are comparing it to the libraries listed below
Sorting:
- DriverPower☆26Updated 11 months ago
- ☆25Updated 3 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆35Updated 3 months ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆27Updated 5 years ago
- ☆38Updated 4 years ago
- Motif manipulation functions for R.☆30Updated 2 months ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆28Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated 2 weeks ago
- Utility functions for FACETS☆39Updated last month
- ☆26Updated last year
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆20Updated 5 years ago
- Collection of fragmentomic analysis scripts☆12Updated last year
- allele specific DNA methylation haplotype region☆13Updated 2 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 2 months ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- documentation for trackViewer☆29Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 3 months ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆28Updated 2 years ago
- R package wrapping bedtools☆44Updated 8 months ago
- ☆11Updated 2 years ago
- Comprehensive analysis of small RNA sequencing data☆34Updated 7 months ago