Alternatives and similar repositories for cragr

Users that are interested in cragr are comparing it to the libraries listed below

• pughlab / fragmentomics
  Collection of fragmentomic analysis scripts
  ☆11Updated 11 months ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆19Updated 2 weeks ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated last year
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• PoisonAlien / somaticfreq
  knowledge-based genotyping of cancer hotspots from the tumor BAM files
  ☆21Updated 3 years ago
• yoyoong / mHapSuite
  ☆12Updated 9 months ago
• cancer-genomics / gemini_wflow
  ☆10Updated 2 years ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago
• bjmt / universalmotif
  Motif manipulation functions for R.
  ☆28Updated 2 months ago
• ChongJenniferZhang / CLCA_WGS
  ☆25Updated last year
• ShixiangWang / sigflow
  Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow
  ☆27Updated 8 months ago
• campbio / Manuscripts
  ☆14Updated 3 years ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 5 months ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated last year
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 10 months ago
• cfce / chilin
  ChIP-seq DC and QC Pipeline
  ☆34Updated 4 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• ShengLi / edmr
  Optimized DMR analysis based on bimodal normal distribution model and cost function for regional methylation analysis.
  ☆17Updated 3 years ago
• ZhouQiangwei / MethHaplo
  allele specific DNA methylation haplotype region
  ☆14Updated last year
• quevedor2 / aneuploidy_score
  R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…
  ☆16Updated 4 years ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated last year
• flemingtonlab / SpliceTools
  ☆17Updated 11 months ago
• ben-laufer / CpG_Me
  A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …
  ☆23Updated 3 years ago
• kunstner / freec2gistic
  Workflow: Convert CONTROL-freec output to GISTIC2
  ☆10Updated 4 years ago
• lagelab / quack
  Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
  ☆20Updated 6 years ago
• aryeelab / bisulfite-seq-tools
  Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…
  ☆20Updated 4 years ago