cancer-genomics / reproduce_lucas_wflowLinks
☆30Updated last year
Alternatives and similar repositories for reproduce_lucas_wflow
Users that are interested in reproduce_lucas_wflow are comparing it to the libraries listed below
Sorting:
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- ☆44Updated 2 years ago
- ☆21Updated this week
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆27Updated last year
- Tutorial Website☆59Updated 4 years ago
- ☆49Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 3 years ago
- ☆38Updated 5 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Comprehensive analysis of small RNA sequencing data☆32Updated 2 months ago
- ☆13Updated 7 years ago
- cfDNA cell type of origin estimation☆31Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- Fork of the Polysolver project☆31Updated 5 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- ☆69Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆67Updated last week
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆40Updated 3 years ago
- QDNAseq package for Bioconductor☆50Updated 11 months ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated last year
- ☆74Updated 2 months ago
- DCC/DAC methylation pipeline source☆56Updated 4 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆74Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆39Updated last year
- ☆24Updated 3 years ago