☆31Mar 5, 2024Updated 2 years ago
Alternatives and similar repositories for reproduce_lucas_wflow
Users that are interested in reproduce_lucas_wflow are comparing it to the libraries listed below
Sorting:
- ☆76Jun 4, 2021Updated 4 years ago
- ☆11Jun 14, 2023Updated 2 years ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆200Mar 20, 2024Updated last year
- ☆25Jan 18, 2022Updated 4 years ago
- cfDNA cell type of origin estimation☆34Oct 19, 2023Updated 2 years ago
- Scripts for analyses in the Griffin manuscript☆11Dec 14, 2022Updated 3 years ago
- ☆10Nov 18, 2022Updated 3 years ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆16Apr 2, 2019Updated 6 years ago
- FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.☆36Updated this week
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆76Aug 18, 2022Updated 3 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆29Jul 27, 2023Updated 2 years ago
- ☆16Jun 27, 2025Updated 8 months ago
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 2 years ago
- Profiling of transcription factor binding sites in cell-free DNA☆27Apr 9, 2020Updated 5 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆18May 11, 2023Updated 2 years ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15May 14, 2025Updated 9 months ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆78Jul 22, 2020Updated 5 years ago
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆41Feb 14, 2026Updated 3 weeks ago
- BISulfite-seq CUI Toolkit☆26Feb 17, 2026Updated 3 weeks ago
- cfDNA analysis workflow☆23Jun 15, 2023Updated 2 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆21Oct 25, 2023Updated 2 years ago
- Lollipop-diagram to visualize genomic mutations☆20Sep 3, 2019Updated 6 years ago
- ☆12Aug 6, 2025Updated 7 months ago
- A simple Bisulfite FastQ Read Simulator (BiQRS)☆13Jul 9, 2024Updated last year
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆44Jul 28, 2021Updated 4 years ago
- ☆22Jul 2, 2020Updated 5 years ago
- R package for CRAG☆12Feb 17, 2025Updated last year
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- R package to work with ctDNA sequencing data☆47Feb 20, 2022Updated 4 years ago
- ☆26Aug 8, 2024Updated last year
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆10Sep 26, 2019Updated 6 years ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆12Aug 4, 2020Updated 5 years ago
- ☆54Mar 9, 2022Updated 4 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆183Feb 24, 2026Updated 2 weeks ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆50Nov 20, 2023Updated 2 years ago
- A set of scripts and functions for analyzing MeDIP-seq datasets☆15Feb 3, 2026Updated last month
- ☆13Jan 18, 2017Updated 9 years ago