☆33Mar 5, 2024Updated 2 years ago
Alternatives and similar repositories for reproduce_lucas_wflow
Users that are interested in reproduce_lucas_wflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆78Jun 4, 2021Updated 5 years ago
- ☆11Jun 14, 2023Updated 3 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆213Mar 20, 2024Updated 2 years ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- ☆25Jan 18, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- cfDNA cell type of origin estimation☆35Oct 19, 2023Updated 2 years ago
- ☆10Nov 18, 2022Updated 3 years ago
- Scripts for analyses in the Griffin manuscript☆12Dec 14, 2022Updated 3 years ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15May 14, 2025Updated last year
- A flexible framework for nucleosome profiling of cell-free DNA☆31Jul 27, 2023Updated 2 years ago
- FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.☆41Jun 29, 2026Updated last week
- ☆10Jul 13, 2022Updated 3 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆82Aug 18, 2022Updated 3 years ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆17Apr 2, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A set of scripts and functions for analyzing MeDIP-seq datasets☆16Feb 3, 2026Updated 5 months ago
- ☆16Jun 27, 2025Updated last year
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 2 years ago
- Profiling of transcription factor binding sites in cell-free DNA☆27Apr 9, 2020Updated 6 years ago
- R package to work with ctDNA sequencing data☆47Feb 20, 2022Updated 4 years ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆12Aug 4, 2020Updated 5 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆80Jul 22, 2020Updated 5 years ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆17May 11, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆57Mar 9, 2022Updated 4 years ago
- ☆22Feb 5, 2025Updated last year
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆44Jul 28, 2021Updated 4 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- cfDNA analysis workflow☆23Jun 15, 2023Updated 3 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆23Oct 25, 2023Updated 2 years ago
- R package for CRAG☆12Feb 17, 2025Updated last year
- ☆13Aug 6, 2025Updated 11 months ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- BISulfite-seq CUI Toolkit☆26Jun 24, 2026Updated 2 weeks ago
- Lollipop-diagram to visualize genomic mutations☆20Sep 3, 2019Updated 6 years ago
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆43Jun 29, 2026Updated last week
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆22May 4, 2026Updated 2 months ago
- A simple Bisulfite FastQ Read Simulator (BiQRS)☆13Jun 11, 2026Updated 3 weeks ago
- ☆22Jul 2, 2020Updated 6 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago