pughlab / fragmentomics
Collection of fragmentomic analysis scripts
☆11Updated 10 months ago
Alternatives and similar repositories for fragmentomics
Users that are interested in fragmentomics are comparing it to the libraries listed below
Sorting:
- Main repository for Drews et al. (Nature, 2022)☆40Updated last year
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 10 months ago
- A flexible framework for nucleosome profiling of cell-free DNA☆27Updated last year
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- R package for CRAG☆11Updated 3 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- ☆13Updated 7 years ago
- Companion repository for the human variant calling pipeline comparison paper☆11Updated 3 years ago
- Rocking R at UMCCR☆9Updated 4 years ago
- An R package to time somatic mutations☆61Updated 4 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- DriverPower☆26Updated 4 months ago
- Clonality inference in multiple tumor samples using phylogeny☆13Updated 7 years ago
- ☆38Updated 5 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- ☆24Updated 9 months ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated 2 years ago
- ☆14Updated 3 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 3 months ago
- Utility functions for FACETS☆35Updated last year
- ☆10Updated last year
- Quantifying copy number signatures from absolute copy number profiles☆24Updated 2 months ago
- ☆28Updated last year
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago