pughlab / fragmentomics
Collection of fragmentomic analysis scripts
☆11Updated 7 months ago
Alternatives and similar repositories for fragmentomics:
Users that are interested in fragmentomics are comparing it to the libraries listed below
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Benchmarking of CNV calling tools☆18Updated 5 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆33Updated 7 months ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- A flexible framework for nucleosome profiling of cell-free DNA☆27Updated last year
- R package for CRAG☆11Updated this week
- Codes and Data for FFPEsig manuscript☆15Updated last year
- ☆28Updated 11 months ago
- SigProfilerSingleSample allows attributing a known set of mutational signatures to an individual sample. The tool identifies the activity…☆23Updated last month
- Rocking R at UMCCR☆9Updated 4 years ago
- ☆21Updated 2 months ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 2 weeks ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆12Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated last week
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆19Updated 5 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆16Updated 5 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated last year
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 5 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated this week
- ☆13Updated 7 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- An R package to time somatic mutations☆60Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Utility functions for FACETS☆34Updated 11 months ago
- RNA editing tests☆16Updated 4 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated last year