Alternatives and similar repositories for DISMIR

Users that are interested in DISMIR are comparing it to the libraries listed below

• aeeckhou / shallowHRD
  This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …
  ☆34Updated 2 months ago
• cancer-genomics / reproduce_lucas_wflow
  ☆31Updated last year
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• jason-weirather / hla-polysolver
  Fork of the Polysolver project
  ☆33Updated 6 years ago
• canceromics / MeRIPseqPipe
  MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
  ☆42Updated last year
• getzlab / MutSig2CV
  MutSig2CV from Lawrence et al. 2014
  ☆33Updated 5 years ago
• KhiabanianLab / All-FIT
  All-FIT - Allele-Frequency-based Imputation of Tumor Purity
  ☆18Updated 6 years ago
• sfu-compbio / citup
  Clonality Inference in Multiple Tumor Samples using Phylogeny
  ☆15Updated 10 years ago
• ylab-hi / ScanNeo
  A pipeline for identifying indel derived neoantigens using RNA-Seq data
  ☆30Updated 3 years ago
• adoebley / Griffin
  A flexible framework for nucleosome profiling of cell-free DNA
  ☆28Updated 2 years ago
• gerstung-lab / MutationTimeR
  An R package to time somatic mutations
  ☆65Updated 4 years ago
• YangLab / CLEAR
  direct comparison of circular and linear RNA expression
  ☆23Updated 4 years ago
• shunliubio / easym6A
  Process m6A/MeRIP-seq data in a single or batch job mode
  ☆20Updated 5 years ago
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆32Updated 3 years ago
• GerkeLab / TCGAhrd
  Homologous recombination deficiency in TCGA PanCancer Atlas
  ☆28Updated 4 years ago
• ChongJenniferZhang / CLCA_WGS
  ☆26Updated 2 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated 2 years ago
• WGLab / CancerVar
  Clinical interpretation of somatic mutations in cancer
  ☆50Updated 9 months ago
• broadinstitute / RNA_MUTECT_1.0-1
  ☆39Updated 5 years ago
• ding-lab / PanCanAtlasGermline
  ☆44Updated 7 years ago
• gxiaolab / REDITs
  RNA editing tests
  ☆17Updated 5 years ago
• ChrisMaherLab / INTEGRATE-Neo
  ☆19Updated 7 years ago
• broadinstitute / gistic2
  Genomic Identification of Significant Targets in Cancer (GISTIC), version 2
  ☆53Updated 3 years ago
• campbio / Manuscripts
  ☆15Updated 3 years ago
• ait5 / CNApp
  CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…
  ☆20Updated 5 years ago
• TRON-Bioinformatics / EasyFuse
  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
  ☆62Updated last month
• zhou-ran / workflows
  snakemake-based workflows
  ☆12Updated 3 years ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆42Updated 4 years ago
• bioinfo-biols / CIRIquant
  circular RNA quantification tools
  ☆31Updated last year
• JiaqiLiZju / Nvwa
  ☆36Updated 3 years ago