Alternatives and similar repositories for DISMIR

Users that are interested in DISMIR are comparing it to the libraries listed below

• aeeckhou / shallowHRD
  This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …
  ☆34Updated last year
• YangLab / CLEAR
  direct comparison of circular and linear RNA expression
  ☆22Updated 4 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• cancer-genomics / reproduce_lucas_wflow
  ☆30Updated last year
• shunliubio / easym6A
  Process m6A/MeRIP-seq data in a single or batch job mode
  ☆20Updated 5 years ago
• TRON-Bioinformatics / EasyFuse
  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
  ☆61Updated 8 months ago
• JiaqiLiZju / Nvwa
  ☆35Updated 2 years ago
• getzlab / MutSig2CV
  MutSig2CV from Lawrence et al. 2014
  ☆31Updated 5 years ago
• broadinstitute / gistic2
  Genomic Identification of Significant Targets in Cancer (GISTIC), version 2
  ☆52Updated 3 years ago
• XWangLabTHU / cfDNApipe
  cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
  ☆70Updated 3 years ago
• XiDsLab / scFusion
  ☆21Updated 3 years ago
• broadinstitute / RNA_MUTECT_1.0-1
  ☆38Updated 5 years ago
• cancer-genomics / delfi_scripts
  ☆74Updated 4 years ago
• sfu-compbio / citup
  Clonality Inference in Multiple Tumor Samples using Phylogeny
  ☆15Updated 10 years ago
• canceromics / MeRIPseqPipe
  MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
  ☆41Updated last year
• jason-weirather / hla-polysolver
  Fork of the Polysolver project
  ☆31Updated 5 years ago
• GerkeLab / TCGAhrd
  Homologous recombination deficiency in TCGA PanCancer Atlas
  ☆28Updated 4 years ago
• sunnyisgalaxy / moabs
  A comprehensive, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data
  ☆17Updated 4 years ago
• nloyfer / UXM_deconv
  ☆45Updated 2 years ago
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆31Updated 4 years ago
• campbio / Manuscripts
  ☆14Updated 3 years ago
• pablo-gar / somatic_mutations_GTEx
  Methods and analysis for Garcia-Nieto, et al. Somatic mutations
  ☆16Updated 5 years ago
• gerstung-lab / MutationTimeR
  An R package to time somatic mutations
  ☆62Updated 4 years ago
• AmpliconSuite / AmpliconSuite-pipeline
  A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …
  ☆68Updated 2 months ago
• WubingZhang / MAGeCKFlute
  Integrative analysis pipeline for pooled CRISPR functional genetic screens
  ☆30Updated last year
• cit-bioinfo / mMCP-counter
  Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data
  ☆12Updated 3 years ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆23Updated 2 years ago
• ChrisMaherLab / INTEGRATE-Neo
  ☆19Updated 7 years ago
• mskcc / lohhla
  Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs
  ☆31Updated 2 years ago
• ShixiangWang / DoAbsolute
  Automate Absolute Copy Number Calling using 'ABSOLUTE' package
  ☆39Updated last year