☆13Jan 4, 2026Updated 2 months ago
Alternatives and similar repositories for KaMRaT
Users that are interested in KaMRaT are comparing it to the libraries listed below
Sorting:
- REINDEER REad Index for abuNDancE quERy☆56Jul 6, 2025Updated 8 months ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- Hypothesis Testing for Polars☆21Aug 2, 2025Updated 7 months ago
- A flexible framework for nucleosome profiling of cell-free DNA☆29Jul 27, 2023Updated 2 years ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- A prototype Matrix<->Hangouts appservice written in Python 3.6 using asyncio.☆12Mar 1, 2018Updated 8 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- Generate an enhanced VCF files from ClinVar XML Full releases☆15Feb 23, 2026Updated last month
- modular k-mer count matrix and Bloom filter construction for large read collections☆86Dec 15, 2025Updated 3 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- Distribution repository for mlpack Go bindings☆12Feb 2, 2026Updated last month
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- A C++ Framework for Evolutionary Single-Objective Optimization Benchmarking☆10Sep 25, 2025Updated 5 months ago
- Variant Effect Prediction for Python☆16Apr 5, 2017Updated 8 years ago
- Full GNU Fortran compatibility for Apple's vecLib BLAS/LAPACK☆17Feb 21, 2022Updated 4 years ago
- A header-only C++ redesign of ARPACK using the Armadillo library☆12May 17, 2016Updated 9 years ago
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 3 years ago
- Benchmarking variant calling in polyploids☆15Nov 26, 2021Updated 4 years ago
- Library to admin/control using automation and Python on PiKVM☆19Oct 20, 2025Updated 5 months ago
- ☆11Jan 15, 2020Updated 6 years ago
- Nim wrapper for the miniz library.☆10Mar 21, 2020Updated 6 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Differential k-mer analysis☆40Jan 29, 2024Updated 2 years ago
- ☆14Mar 18, 2016Updated 10 years ago
- Small datasets for testing purpose (FASTQ, BAM)☆22Jul 7, 2021Updated 4 years ago
- Scripts with all the steps to create the RStudio Server image from DigitalOcean Marketplace☆10Feb 28, 2021Updated 5 years ago
- Complete analysis pipeline for PAR-CLIP data☆10May 7, 2015Updated 10 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- NES scripts☆17Mar 5, 2019Updated 7 years ago
- fast easy interval overlapping for nim-lang☆29Jul 9, 2025Updated 8 months ago
- NGS Tutorial☆15Apr 22, 2017Updated 8 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- A fast and flexible program to annotate/interpret genetic variants in VCF/BCF file☆20Oct 26, 2020Updated 5 years ago
- code for paper: Identifiability Guarantees for Causal Disentanglement from Soft Interventions☆15Nov 27, 2023Updated 2 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆19Aug 9, 2023Updated 2 years ago
- Convolutional neural network for categorising prostate cancer from MRI images.☆11Jul 22, 2020Updated 5 years ago
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 10 years ago