Transipedia / KaMRaT
☆12Updated last week
Alternatives and similar repositories for KaMRaT:
Users that are interested in KaMRaT are comparing it to the libraries listed below
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated last month
- A command line tool to compute mapping statistics from a BAM file☆23Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Split a BAM file by haplotype support☆16Updated 7 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- UCSC liftOver (genome build converter) for vcf format☆12Updated 7 years ago
- Adapters for trimming☆30Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆11Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- CADD-SV – a framework to score the effect of structural variants☆14Updated 2 weeks ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- ☆23Updated 5 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 years ago
- v2.x of the microassembly based somatic variant caller☆20Updated last week
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Automated Detection and Qualification of Differential Methylation☆12Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 10 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated last week
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 9 months ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 7 months ago
- Liftover VCF files☆17Updated 8 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago