mskilab-org / dryclean
Irons out wrinkles in noisy coverage data using robust PCA
☆13Updated this week
Alternatives and similar repositories for dryclean:
Users that are interested in dryclean are comparing it to the libraries listed below
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- ☆22Updated 4 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 2 months ago
- ☆13Updated 7 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- DriverPower☆26Updated 3 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- ☆34Updated 5 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- QDNAseq bin annotation for hg38☆14Updated 3 weeks ago
- Codes and Data for FFPEsig manuscript☆16Updated last year
- cfDNA cell type of origin estimation☆31Updated last year
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- Filter and prioritize fusion calls☆20Updated 6 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 10 months ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆30Updated 3 weeks ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 3 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 2 months ago
- ☆11Updated last week
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆10Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 2 weeks ago