Irons out wrinkles in noisy coverage data using robust PCA
☆15May 14, 2025Updated last year
Alternatives and similar repositories for dryclean
Users that are interested in dryclean are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pan gGnome Viewer☆10Jul 10, 2025Updated 11 months ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- ☆11Apr 25, 2024Updated 2 years ago
- ☆33Mar 5, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆14Apr 9, 2022Updated 4 years ago
- Quantitation and visualization of differential alternative splicing events☆11May 2, 2023Updated 3 years ago
- ☆12Nov 21, 2023Updated 2 years ago
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆43Feb 14, 2026Updated 4 months ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17May 10, 2026Updated last month
- A flexible framework for nucleosome profiling of cell-free DNA☆31Jul 27, 2023Updated 2 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 7 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Jun 2, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- High-definition reconstruction of clonal composition from next-generation sequencing data☆44Jun 10, 2016Updated 10 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24May 21, 2026Updated 3 weeks ago
- Isoform co-usage networks from single-cell RNA-seq data☆17Feb 21, 2024Updated 2 years ago
- ☆78Jun 4, 2021Updated 5 years ago
- ☆26Dec 9, 2022Updated 3 years ago
- Calculate and plot distributions of genomic ranges☆27Apr 23, 2025Updated last year
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Collection of fragmentomic analysis scripts☆14Jul 3, 2024Updated last year
- ☆26Dec 18, 2024Updated last year
- HTSlib bindings for Ruby☆11May 14, 2026Updated last month
- Cancer Predisposition Sequencing Reporter (CPSR)☆64Updated this week
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆17May 11, 2023Updated 3 years ago
- A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for M…☆11Updated this week
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Jun 1, 2026Updated 2 weeks ago
- Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆22Jun 8, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- ☆18Jan 30, 2023Updated 3 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Model-based tumour subclonal deconvolution using population genetics☆36Dec 2, 2025Updated 6 months ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆19Mar 24, 2026Updated 2 months ago
- deconvolution for RNAseq and bisulfite sequencing☆12Aug 17, 2020Updated 5 years ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆14Jul 24, 2025Updated 10 months ago