mskilab-org / dryclean
Irons out wrinkles in noisy coverage data using robust PCA
☆13Updated 4 months ago
Alternatives and similar repositories for dryclean:
Users that are interested in dryclean are comparing it to the libraries listed below
- ☆21Updated last month
- An R package for predicting HR deficiency from mutation contexts☆27Updated last year
- DriverPower☆26Updated this week
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- ☆13Updated 7 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆28Updated 5 years ago
- ☆11Updated 3 months ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 2 weeks ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆10Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- QDNAseq bin annotation for hg38☆14Updated 2 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆16Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 4 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 2 months ago
- Utility functions for FACETS☆34Updated 9 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Find and characterise transposable element insertions☆21Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- Genomic Association Tester☆30Updated last year
- ☆23Updated 3 years ago