mskilab-org / dryclean
Irons out wrinkles in noisy coverage data using robust PCA
☆13Updated last month
Alternatives and similar repositories for dryclean:
Users that are interested in dryclean are comparing it to the libraries listed below
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last week
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated last month
- ☆13Updated 7 years ago
- ☆21Updated 3 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 9 months ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated last month
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- allele specific DNA methylation haplotype region☆14Updated last year
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- ☆34Updated 5 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- ☆11Updated 6 months ago
- ☆28Updated 3 months ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 3 months ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 weeks ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 3 weeks ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated 2 years ago