mskilab-org / dryclean
Irons out wrinkles in noisy coverage data using robust PCA
☆13Updated 5 months ago
Alternatives and similar repositories for dryclean:
Users that are interested in dryclean are comparing it to the libraries listed below
- ☆21Updated 2 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 months ago
- ☆10Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 5 years ago
- DriverPower☆26Updated last month
- An R package for predicting HR deficiency from mutation contexts☆28Updated last week
- Codes and Data for FFPEsig manuscript☆15Updated last year
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 7 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated 9 months ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆16Updated 5 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 5 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆10Updated 3 years ago
- ☆13Updated 7 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- ☆23Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Filter and prioritize fusion calls☆20Updated 4 months ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆20Updated 4 years ago
- ☆11Updated 4 months ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- Reconstruction of focal amplifications with long reads☆18Updated this week
- Somatic point mutation caller☆28Updated 2 months ago
- Rocking R at UMCCR☆9Updated 4 years ago