biopet / validatefastqLinks
☆12Updated 7 years ago
Alternatives and similar repositories for validatefastq
Users that are interested in validatefastq are comparing it to the libraries listed below
Sorting:
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆55Updated 2 years ago
- An interactive web-tool for RNA-seq analysis☆70Updated 9 months ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- ☆29Updated last year
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆89Updated last year
- R package wrapping bedtools☆44Updated 8 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- SeqMonk NGS visualisation and analysis tool☆50Updated last week
- Genomic data interpretation and visualization Workshop☆21Updated 2 months ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated 2 weeks ago
- An R interface to the MEME Suite☆53Updated 5 months ago
- R interface to the JBrowse 2 Linear Genome View.☆39Updated last year
- A tidyverse and grammar of graphics powered line traces visualizer☆30Updated 2 months ago
- workshop website on readthedocs☆21Updated last month
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆41Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Workflow management with Nextflow and nf-core☆27Updated 10 months ago
- Maximum likelihood demultiplexing☆48Updated 9 months ago
- BigWig and BAM utilities☆98Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the of…☆14Updated 2 years ago