Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes
☆11Nov 18, 2022Updated 3 years ago
Alternatives and similar repositories for reproduce_liver_final
Users that are interested in reproduce_liver_final are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆43Feb 14, 2026Updated 4 months ago
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Jan 18, 2017Updated 9 years ago
- FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.☆39May 30, 2026Updated 2 weeks ago
- ☆78Jun 4, 2021Updated 5 years ago
- ☆11Jun 14, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆18Oct 25, 2024Updated last year
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆82Aug 18, 2022Updated 3 years ago
- ☆33Mar 5, 2024Updated 2 years ago
- BISulfite-seq CUI Toolkit☆26May 27, 2026Updated 3 weeks ago
- ☆13Jan 18, 2017Updated 9 years ago
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 10 years ago
- Workflow for preprocessing cfDNA samples.☆12Nov 11, 2024Updated last year
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆80Jul 22, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 5 years ago
- SEEKIN: SEquence-based Estimation of KINship☆14Oct 11, 2017Updated 8 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- DNA copy number detection from off-target sequence data☆34May 17, 2018Updated 8 years ago
- gap opening realigner for BAM data streams☆18Oct 17, 2012Updated 13 years ago
- A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets☆21Feb 16, 2026Updated 4 months ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Jul 30, 2020Updated 5 years ago
- Inferring expressed genes by whole-genome sequencing of plasma DNA☆19May 23, 2016Updated 10 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆212Mar 20, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data☆18Nov 26, 2021Updated 4 years ago
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago
- ☆16Jun 27, 2025Updated 11 months ago
- ☆43Feb 9, 2024Updated 2 years ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆17Apr 2, 2019Updated 7 years ago
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- A flexible framework for nucleosome profiling of cell-free DNA☆31Jul 27, 2023Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆28Jun 11, 2026Updated last week
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Oct 5, 2019Updated 6 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆22May 9, 2019Updated 7 years ago
- cfDNA cell type of origin estimation☆35Oct 19, 2023Updated 2 years ago
- Profiling of transcription factor binding sites in cell-free DNA☆27Apr 9, 2020Updated 6 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Mar 24, 2026Updated 2 months ago
- Mircosoft ToDo sync notion☆14Apr 17, 2022Updated 4 years ago
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated last month