rwsayaman / TCGA_PanCancer_Immune_GeneticsLinks
☆11Updated last year
Alternatives and similar repositories for TCGA_PanCancer_Immune_Genetics
Users that are interested in TCGA_PanCancer_Immune_Genetics are comparing it to the libraries listed below
Sorting:
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- ☆40Updated 5 months ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆18Updated 2 years ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆13Updated 3 months ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 6 years ago
- ☆18Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆63Updated 2 months ago
- An R package to plot maps of clone distributions in somatic evolution☆19Updated 2 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Updated 3 years ago
- ☆48Updated last year
- code for data processing and visualisation associated with the stromal subclasses manuscript☆13Updated 5 years ago
- ☆13Updated 6 years ago
- scWGCNA☆61Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Updated 3 years ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆29Updated 5 years ago
- ☆54Updated last year
- Repository for Cibersortx☆62Updated 4 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆17Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆28Updated 4 years ago
- CELLEX (CELL-type EXpression-specificity)☆43Updated 2 years ago
- Draw phylogenetic trees of tumor evolution☆87Updated 2 years ago
- xCell 2.0: Robust Cell Type Enrichment Analysis☆13Updated 2 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated 2 months ago
- scRNA-seq cell type identification☆44Updated 6 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆48Updated 2 years ago