Alternatives and similar repositories for gwas-power

Users that are interested in gwas-power are comparing it to the libraries listed below

• msesia / knockoffgwas
  A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
  ☆16Updated 3 years ago
• gravelLab / tracts
  A set of tools for modelling ancestry patterns along the genome.
  ☆23Updated this week
• standard-aaron / palm
  Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies
  ☆16Updated 5 years ago
• sriramlab / SCOPE
  Scalable population structure inference
  ☆18Updated 3 years ago
• healthdisparities / rye
  Large scale ancestry inference from PCA data
  ☆23Updated 2 years ago
• jaredgk / PPP
  Repository for pipeline code
  ☆26Updated last year
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated last year
• Atkinson-Lab / Post-QC
  Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…
  ☆11Updated 6 years ago
• statgen / topmed_variant_calling
  ☆24Updated last year
• stschiff / GAworkshop
  Genome Analysis Workshop (Jena 2016) material
  ☆18Updated 8 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated last year
• tkzeng / GeneBayes
  ☆29Updated 5 months ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆44Updated 3 weeks ago
• atgu / hgdp_tgp
  ☆47Updated 5 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 8 months ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆30Updated 2 months ago
• adhikari-statgen-lab / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆39Updated 2 months ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆41Updated 2 years ago
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆29Updated last year
• KosukeHamazaki / RAINBOWR
  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
  ☆24Updated 2 months ago
• mulinlab / VarNote
  Fast and scalable variant annotation tool
  ☆30Updated 3 years ago
• cortes-ciriano-lab / ReConPlot
  ☆24Updated 11 months ago
• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆94Updated 3 years ago
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆25Updated last year
• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 5 years ago
• lorinanthony / MAPIT
  Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
  ☆16Updated 3 years ago
• yairf / SDS
  R code to compute the Singleton Density Score (SDS)
  ☆31Updated 9 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆65Updated last month
• sunnyeesl / BigLD
  ☆21Updated 3 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆42Updated 3 years ago