NovembreLab / eems-around-the-worldLinks
Repo to analyze population genetic data with many different methods
☆15Updated 5 years ago
Alternatives and similar repositories for eems-around-the-world
Users that are interested in eems-around-the-world are comparing it to the libraries listed below
Sorting:
- Sweep Inference Framework (controlling for correlation)☆29Updated last year
- Research repo for Yang et al., 2017 paper.☆9Updated 5 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated last month
- A series of scripts to automate sequence workflows☆19Updated last month
- Module for analysing admixture graphs☆28Updated 7 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- machine learning applications for dadi☆15Updated 5 months ago
- Minimal Assumption Genomic Inference of Coalescence☆14Updated last year
- The Simple Fool's Guide to population genomics using RNA-Seq☆28Updated 9 years ago
- ☆17Updated 9 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 months ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- ☆25Updated 3 weeks ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Updated 4 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆31Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 7 months ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 3 years ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Updated 7 years ago
- detection of duplications and deletions using Python based machine learning techniques☆28Updated 5 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated last month
- Evolutionary Transcriptomics with R☆44Updated last week
- Distribution of TEs and their relationship to genes in host genome☆22Updated 2 years ago
- Demographic inference from whole genomes☆13Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- R code to compute the Singleton Density Score (SDS)☆31Updated 8 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- Guide to transcriptome assembly & analysis☆21Updated 8 years ago