Shuhua-Group / CPC-graph-based-NGS-pipelineLinks
A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data
☆17Updated 4 months ago
Alternatives and similar repositories for CPC-graph-based-NGS-pipeline
Users that are interested in CPC-graph-based-NGS-pipeline are comparing it to the libraries listed below
Sorting:
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 6 months ago
- scripts used for processing and analyzing data in the article.☆13Updated 6 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Updated last year
- ☆27Updated 3 years ago
- ☆23Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- ☆32Updated last year
- Structural variant merging tool☆57Updated last year
- Variant annotation and merging pipeline☆41Updated 5 months ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆36Updated 6 months ago
- Scripts that used in our chicken T2T manuscript.☆22Updated 2 years ago
- A comprehensive pipeline for RNAseq data analysis☆22Updated last year
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- ☆20Updated 3 years ago
- tutorial on pggb☆36Updated last year
- ☆36Updated last year
- ☆29Updated 2 years ago
- ☆20Updated last week
- ☆16Updated 3 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆34Updated last year
- Repository for pipeline code☆26Updated last year
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions☆33Updated last year
- MEGAnE☆33Updated 2 years ago
- ☆11Updated 4 years ago
- ☆38Updated 2 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- The cattle Genotype-Tissue Expression atlas v1☆28Updated 2 years ago
- microRNA PREdiction From small RNA-seq data☆31Updated 8 years ago