Alternatives and similar repositories for CPC-graph-based-NGS-pipeline

Users that are interested in CPC-graph-based-NGS-pipeline are comparing it to the libraries listed below

• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆41Updated 5 months ago
• grimmlab / permGWAS
  Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions
  ☆33Updated last year
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 5 years ago
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆22Updated 2 years ago
• hewm2008 / LDBlockShow
  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
  ☆35Updated 5 months ago
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆31Updated 2 years ago
• qclian / Pan_Ath
  Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…
  ☆23Updated last year
• pangenome / pggb-workshop
  tutorial on pggb
  ☆36Updated 11 months ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 7 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆46Updated 5 months ago
• BGI-shenzhen / BamDeal
  BamDeal: a comprehensive toolkit for bam manipulation
  ☆54Updated 3 years ago
• LappalainenLab / lorals_paper_code
  ☆27Updated 3 years ago
• Nextomics / nextsv
  ☆36Updated last year
• farhangus / Sniffles2_plot
  ☆32Updated last year
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆42Updated 4 years ago
• hanlinqian / IntegrativeNetworkMap
  ☆23Updated 3 years ago
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆29Updated last year
• vgteam / giraffe-sv-paper
  ☆44Updated last year
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆31Updated last year
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆57Updated last year
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago
• caulilin / QTG_Seq
  ☆22Updated 6 years ago
• yiliao1022 / Pepper3Dgenome
  ☆16Updated 3 years ago
• shohei-kojima / MEGAnE
  MEGAnE
  ☆33Updated 2 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• schmitzlab / Widespread-Long-range-Cis-Regulatory-Elements-in-the-Maize-Genome
  scripts used for processing and analyzing data in the article.
  ☆13Updated 6 years ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 4 years ago
• LAILAB-CAU / update-Mo17
  ☆29Updated 2 years ago
• jaredgk / PPP
  Repository for pipeline code
  ☆26Updated last year