Alternatives and similar repositories for ADNA-Tools

Users that are interested in ADNA-Tools are comparing it to the libraries listed below

• DReichLab / adna-workflow
  Workflow for processing Illumina sequencing runs for ancient human DNA
  ☆25Updated 5 years ago
• RKMlab / perf
  PERF is an Exhaustive Repeat Finder
  ☆33Updated 4 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 4 years ago
• leospeidel / twigstats
  Time-stratified f-statistics
  ☆15Updated 6 months ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆28Updated last year
• estebanpw / chromeister
  A dotplot generator for large chromosomes
  ☆43Updated 2 years ago
• hillerlab / CESAR2.0
  ☆28Updated 3 years ago
• hringbauer / ancIBD
  Detecting IBD within low coverage ancient DNA data. Development Repository for software package that contains code for manuscript.
  ☆14Updated last week
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆31Updated 5 years ago
• cmdcolin / mafviewer
  A JBrowse 1 plugin to view multiple alignment format (MAF) files
  ☆27Updated 2 years ago
• schatzlab / appliedgenomics2021
  Materials for Spring 2021 Applied Genomics Course
  ☆53Updated 4 years ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆25Updated 4 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated 2 weeks ago
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆38Updated 3 months ago
• dvdylus / read2tree
  ☆20Updated 3 years ago
• sanger-tol / genomeassembly
  Implementation of ToL genome assembly workflows
  ☆26Updated this week
• marbl / Primates
  Complete assemblies of non-human primate genomes
  ☆56Updated 8 months ago
• grenaud / leeHom
  Bayesian reconstruction of ancient DNA fragments
  ☆30Updated last year
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated 2 years ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆39Updated 2 years ago
• JustinChu / ntsm
  This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…
  ☆30Updated last year
• jkimlab / mySyntenyPortal
  A stand-alone application for constructing websites for visualizing and browsing synteny blocks
  ☆18Updated 5 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago
• jonassibbesen / vgrna-project-paper
  Bash scripts and data used in pantranscriptomic paper
  ☆24Updated 3 years ago
• nterhoeven / blast2bed
  convert a blast output to a bed file
  ☆12Updated 10 years ago
• marieBvr / TEs_genes_relationship_pipeline
  Distribution of TEs and their relationship to genes in host genome
  ☆24Updated 2 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆51Updated 6 years ago
• enormandeau / snplift
  Transfer coordinates across genomes
  ☆23Updated 8 months ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆54Updated 11 months ago