This project is a collection of tools for bioinformatic processing of ancient DNA data at the Harvard Medical School Reich Lab.
☆26Aug 15, 2025Updated 7 months ago
Alternatives and similar repositories for ADNA-Tools
Users that are interested in ADNA-Tools are comparing it to the libraries listed below
Sorting:
- Workflow for processing Illumina sequencing runs for ancient human DNA☆25Oct 29, 2020Updated 5 years ago
- A workflow for integrating ancient lineages into present-day phylogenies.☆32Jul 7, 2025Updated 8 months ago
- Time-stratified f-statistics☆15Aug 1, 2025Updated 7 months ago
- ☆13Aug 18, 2023Updated 2 years ago
- Python package for detecting positive selective sweeps using time-series genomics sampling data.☆19Apr 9, 2024Updated last year
- BITE: BioInformatics tools for everyone☆22Jul 25, 2024Updated last year
- Support material for the "Comparative Genomics Laboratory" classes of the MSc in Biodiversity and Evolution at the University of Bologna.☆13Feb 27, 2026Updated 3 weeks ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆18Mar 14, 2026Updated last week
- HyPhy tutorials☆11Apr 9, 2018Updated 7 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 10 months ago
- ☆51Feb 18, 2026Updated last month
- Infering ancestral synteny with hierarchical orthologous groups☆38Oct 17, 2025Updated 5 months ago
- ☆29Aug 7, 2025Updated 7 months ago
- Scripts to generate and analyze afdb clusters☆11Sep 15, 2023Updated 2 years ago
- Tools test whether admixture occurred and more☆222Sep 6, 2024Updated last year
- ☆26Mar 26, 2024Updated last year
- Detecting IBD within low coverage ancient DNA data. Development Repository for software package that contains code for manuscript.☆14Jan 28, 2026Updated last month
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 9 months ago
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆21Jan 25, 2023Updated 3 years ago
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Jan 20, 2018Updated 8 years ago
- R Functions to calculate power of GWAS studies for a single associated SNP, under various parameters. Suitable for classical (i.e. single…☆22Jul 19, 2018Updated 7 years ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.☆11Mar 27, 2020Updated 5 years ago
- Scripts used for generating Neale Lab UKB results☆20Oct 11, 2022Updated 3 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆29Feb 23, 2026Updated 3 weeks ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- Programs to analyse NGS data for population genetics purposes☆180Aug 27, 2024Updated last year
- Demographic analysis of Brassica oleracea☆10Jan 30, 2026Updated last month
- Pipeline for phasing sequence data in polyploids. Designed for target enrichment data, but probably works with other data too.☆12Jun 20, 2024Updated last year
- ☆10Jan 18, 2023Updated 3 years ago
- ☆13May 13, 2024Updated last year
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 5 months ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆16May 19, 2023Updated 2 years ago
- population genetic simulations with R and Shiny☆28Nov 3, 2024Updated last year