This project is a collection of tools for bioinformatic processing of ancient DNA data at the Harvard Medical School Reich Lab.
☆30Aug 21, 2026Updated last week
Alternatives and similar repositories for ADNA-Tools
Users that are interested in ADNA-Tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow for processing Illumina sequencing runs for ancient human DNA☆28Oct 29, 2020Updated 5 years ago
- A workflow for integrating ancient lineages into present-day phylogenies.☆32Jul 24, 2026Updated last month
- ☆18Dec 3, 2024Updated last year
- Time-stratified f-statistics☆17Aug 1, 2025Updated last year
- Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.☆11Mar 27, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Aug 18, 2023Updated 3 years ago
- Python package for detecting positive selective sweeps using time-series genomics sampling data.☆21Apr 9, 2024Updated 2 years ago
- A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage☆22Nov 18, 2023Updated 2 years ago
- Course in population genomics at BiRC☆12Mar 18, 2026Updated 5 months ago
- Repository with documentation file of our Jan 22-24 workshop on Computational Population Genetics in Jena, Germany.☆15Aug 14, 2026Updated 2 weeks ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆17Aug 6, 2024Updated 2 years ago
- Here I show how to use Convolutional Neural Networks (CNNs) for Ancient DNA analysis☆15Apr 24, 2019Updated 7 years ago
- This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis…☆17Jul 17, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 3 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- HyPhy tutorials☆11Apr 9, 2018Updated 8 years ago
- Suite of tools for pangenomics built using vg☆25Mar 6, 2026Updated 5 months ago
- Introduction to Ancient Metagenomics Book☆16Updated this week
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆48Jul 27, 2023Updated 3 years ago
- BITE: BioInformatics tools for everyone☆22Jul 25, 2024Updated 2 years ago
- ☆12Jan 9, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- ☆53May 12, 2026Updated 3 months ago
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆23Updated this week
- intro to programming for IE2 evolution students☆12Jan 31, 2024Updated 2 years ago
- Extract a simulated 23andMe (V3) style file from a Whole Genome BAM file☆35Mar 19, 2025Updated last year
- Tools test whether admixture occurred and more☆232Jul 13, 2026Updated last month
- Scripts to generate and analyze afdb clusters☆11Sep 15, 2023Updated 2 years ago
- Detecting IBD within low coverage ancient DNA data. Development Repository for software package that contains code for manuscript.☆17Apr 22, 2026Updated 4 months ago
- The index files for sequence and other data created for the 1000 Genomes project and the International Genome Sample Resource☆47Jul 15, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆27Mar 26, 2024Updated 2 years ago
- R Functions to calculate power of GWAS studies for a single associated SNP, under various parameters. Suitable for classical (i.e. single…☆23Jul 19, 2018Updated 8 years ago
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆24Jan 25, 2023Updated 3 years ago
- ☆30Aug 29, 2024Updated 2 years ago
- Support material for the "Comparative Genomics Laboratory" classes of the MSc in Biodiversity and Evolution at the University of Bologna.☆13Feb 27, 2026Updated 6 months ago
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Jan 20, 2018Updated 8 years ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated 2 years ago