Alternatives and similar repositories for LDblocks_GRCh38

Users that are interested in LDblocks_GRCh38 are comparing it to the libraries listed below

• atgu / hgdp_tgp
  ☆49Updated 7 months ago
• FINNGEN / CS-PRS-pipeline
  PRS pipeline using PRS_CS
  ☆15Updated 3 months ago
• Genentech / midasHLA
  R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…
  ☆14Updated 2 years ago
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆29Updated 2 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• FINNGEN / finemapping-pipeline
  Statistical fine-mapping pipeline in FinnGen
  ☆31Updated 4 months ago
• cumc / bioworkflows
  In-house computational biology workflows at Columbia Neurology
  ☆36Updated 5 months ago
• qlu-lab / X-Wing
  Cross-population weighting framework to improve genetic risk prediction in ancestrally diverse populations
  ☆16Updated last year
• immunogenomics / HLA_analyses_tutorial
  A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…
  ☆71Updated last year
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated this week
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆35Updated 2 months ago
• Cloufield / formatbook
  A collection of commonly used formats for quick lookup.
  ☆14Updated last month
• jianyangqt / osca
  ☆21Updated 2 years ago
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆41Updated last year
• karltayeb / cafeh
  ☆13Updated 3 years ago
• astrazeneca-cgr-publications / PEACOK
  Phenome Exome Association and Correlation Of Key phenotypes
  ☆32Updated 4 years ago
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆42Updated last year
• broadinstitute / gtex-v8
  Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
  ☆46Updated last year
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated 3 years ago
• MRCIEU / gwas2vcf
  Convert GWAS summary statistics to VCF
  ☆48Updated 2 years ago
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆47Updated last week
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆31Updated last year
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆40Updated 2 years ago
• casanova-lab / NHC
  NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity
  ☆12Updated 2 years ago
• ShujiaHuang / qmplot
  A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.
  ☆48Updated 2 years ago
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆47Updated 3 weeks ago
• hoffmangroup / umap
  ☆30Updated 7 months ago
• weizhou0 / GATE
  ☆24Updated 2 years ago
• daviddaiweizhang / fraposa
  ☆17Updated 2 years ago