msesia / knockoffgwasLinks
A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
☆15Updated 3 years ago
Alternatives and similar repositories for knockoffgwas
Users that are interested in knockoffgwas are comparing it to the libraries listed below
Sorting:
- Sweep Inference Framework (controlling for correlation)☆29Updated last year
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- ☆25Updated 3 months ago
- ☆21Updated 3 years ago
- Scalable population structure inference☆18Updated 2 years ago
- Repository for pipeline code☆26Updated last year
- machine learning applications for dadi☆15Updated 7 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 5 months ago
- Large scale ancestry inference from PCA data☆23Updated 2 years ago
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Updated 2 weeks ago
- Tools for merging Tandem Repeat VCF files☆33Updated 4 months ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆64Updated 2 months ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Updated 2 weeks ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 9 months ago
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Updated 4 years ago
- R Functions to calculate power of GWAS studies for a single associated SNP, under various parameters. Suitable for classical (i.e. single…☆21Updated 7 years ago
- ☆20Updated last year
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- Integrative analysis of structural variations.☆40Updated last year
- Demographic inference from whole genomes☆13Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Updated last month
- R package to perform Bayesian Genome-Wide Association Studies☆40Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- ☆23Updated 9 months ago
- TQSLE v1.0 released☆10Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆11Updated 5 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Updated 9 months ago