Alternatives and similar repositories for Population-Genomics-via-RNAseq

Users that are interested in Population-Genomics-via-RNAseq are comparing it to the libraries listed below

• DeWitP / SFG

  View on GitHub
  The Simple Fool's Guide to population genomics using RNA-Seq
  ☆28Jul 8, 2016Updated 9 years ago
• sestaton / sesbio

  View on GitHub
  Bioinformatics scripts for genome analysis
  ☆17Oct 26, 2022Updated 3 years ago
• molbiodiv / meta-barcoding-dual-indexing

  View on GitHub
  Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach - Computational methods
  ☆10Jan 19, 2022Updated 4 years ago
• samebdon / heRho

  View on GitHub
  heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412
  ☆10Aug 24, 2025Updated 5 months ago
• lh3 / rtgeval

  View on GitHub
  Wrapper for RTG's vcfeval; DEPRECATED!
  ☆21Apr 8, 2016Updated 9 years ago
• tengmx / gcapc

  View on GitHub
  ChIP-seq peak calling with GC effects adjustment
  ☆10Jul 5, 2018Updated 7 years ago
• sid-krish / rhometa

  View on GitHub
  metagenome population recombination rate estimation pipeline
  ☆12Nov 23, 2025Updated 2 months ago
• marcottelab / protein_complex_maps

  View on GitHub
  Kdrew's scripts for handling protein complex map data
  ☆14Jun 12, 2025Updated 8 months ago
• jradrion / TEFLoN

  View on GitHub
  TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.
  ☆13Mar 5, 2021Updated 4 years ago
• broadinstitute / cms

  View on GitHub
  Composite of Multiple Signals: tests for selection in meiotically recombinant populations
  ☆14Jul 4, 2020Updated 5 years ago
• lauterbur / Flex-sweep

  View on GitHub
  Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.
  ☆15Mar 1, 2024Updated last year
• russcd / SELAM

  View on GitHub
  Simulation of Epistasis Local adaptation, with Ancestry and Mate choice
  ☆11Apr 22, 2023Updated 2 years ago
• gbradburd / SpaceMix

  View on GitHub
  ☆30Oct 14, 2022Updated 3 years ago
• clockor2 / clockor2

  View on GitHub
  Inferring global and local strict molecular clocks using root-to-tip regression
  ☆15Nov 17, 2025Updated 3 months ago
• pdimens / harpy

  View on GitHub
  Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!
  ☆18Updated this week
• MaikeMorrison / FSTruct

  View on GitHub
  ☆13Aug 18, 2023Updated 2 years ago
• NCBI-Hackathons / Structural_Variant_Comparison

  View on GitHub
  SV
  ☆14May 3, 2018Updated 7 years ago
• Gaius-Augustus / clamsa

  View on GitHub
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆13Nov 21, 2024Updated last year
• edawson / svaha

  View on GitHub
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆11Mar 6, 2024Updated last year
• Bioconductor / UseBioconductor

  View on GitHub
  Training material for intermediate R / Bioconductor courses
  ☆17Mar 15, 2023Updated 2 years ago
• NESCent / MINOTAUR

  View on GitHub
  Multivariate vIsualisatioN and OuTlier Analysis Using R
  ☆14Apr 8, 2023Updated 2 years ago
• ThomasTaus / poolSeq

  View on GitHub
  Analyze and simulate Pool-Seq time series data
  ☆17Jun 16, 2022Updated 3 years ago
• gbradburd / conStruct

  View on GitHub
  method for modeling continuous and discrete population genetic structure
  ☆38Jan 8, 2024Updated 2 years ago
• NovembreLab / PCAviz

  View on GitHub
  An R package to help in plotting PCA results nicely.
  ☆12Jan 16, 2020Updated 6 years ago
• NovembreLab / eems-around-the-world

  View on GitHub
  Repo to analyze population genetic data with many different methods
  ☆15Oct 23, 2019Updated 6 years ago
• hallamlab / FragGeneScanPlus

  View on GitHub
  Scalable high-throughput short-read open reading frame prediction
  ☆12Jan 13, 2017Updated 9 years ago
• vsbuffalo / msr

  View on GitHub
  Process MS results in R, in a tidy way
  ☆16May 25, 2018Updated 7 years ago
• timbeissinger / Maize-Teo-Scripts

  View on GitHub
  ☆17Dec 2, 2015Updated 10 years ago
• lh3 / unicall

  View on GitHub
  A wrapper for calling small variants from human germline high-coverage single-sample Illumina data
  ☆14Jul 21, 2019Updated 6 years ago
• nextgenusfs / redmask

  View on GitHub
  Genome assembly soft-masking using Red (REpeat Detector)
  ☆18Dec 7, 2018Updated 7 years ago
• jingshuw / descend

  View on GitHub
  ☆19Oct 27, 2021Updated 4 years ago
• champost / ABLE

  View on GitHub
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Jul 4, 2018Updated 7 years ago
• i5K-KINBRE-script-share / Irys-scaffolding

  View on GitHub
  scripts to parse IrysView output
  ☆39Sep 3, 2015Updated 10 years ago
• michaelbarton / bioinformatics-career-survey

  View on GitHub
  Survey of bioinformatics field
  ☆27Mar 18, 2012Updated 13 years ago
• cbg-ethz / ConsensusFixer

  View on GitHub
  Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.
  ☆18May 14, 2018Updated 7 years ago
• akiomiyao / tif

  View on GitHub
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20May 20, 2025Updated 8 months ago
• GregoryFaust / SVsim

  View on GitHub
  SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.
  ☆18Dec 4, 2017Updated 8 years ago
• jydu / maffilter

  View on GitHub
  The MafFilter genome alignment processor
  ☆19Jan 6, 2026Updated last month
• mojaveazure / angsd-wrapper

  View on GitHub
  Utilities for analyzing next generation sequencing data
  ☆17Sep 28, 2018Updated 7 years ago