standard-aaron / palm

Related projects ⓘ

Alternatives and complementary repositories for palm

• gravelLab / tracts
  A set of tools for modelling ancestry patterns along the genome.
  ☆22Updated 3 weeks ago
• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 4 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆39Updated 5 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆53Updated 2 weeks ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆27Updated last year
• yairf / SDS
  R code to compute the Singleton Density Score (SDS)
  ☆28Updated 8 years ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆25Updated 3 weeks ago
• Popgen48 / scalepopgen
  ☆19Updated 7 months ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆29Updated last month
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 6 years ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆41Updated this week
• tsackton / linked-selection
  ☆24Updated 7 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• MyersGroup / relate
  Software for estimating genome-wide genealogies for thousands of samples
  ☆28Updated last month
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆26Updated 3 months ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆32Updated 3 years ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆27Updated 3 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆30Updated 7 months ago
• LohmuellerLab / fitdadi
  Tools for inference of the DFE with dadi
  ☆14Updated 3 years ago
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆30Updated 7 months ago
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆13Updated 4 years ago
• hemstrow / snpR
  ☆28Updated 2 weeks ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆32Updated 4 years ago
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆30Updated last year
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆28Updated 4 months ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated last year
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆46Updated last year
• CshlSiepelLab / arg-selection
  ARG-based inference of selection using deep learning
  ☆16Updated last year
• ANGSD / NgsRelate
  ☆42Updated 11 months ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆35Updated last year