standard-aaron / palmLinks
Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies
☆16Updated 4 years ago
Alternatives and similar repositories for palm
Users that are interested in palm are comparing it to the libraries listed below
Sorting:
- ☆20Updated 4 years ago
- A set of tools for modelling ancestry patterns along the genome.☆22Updated this week
- Haplotype and population structure inference using neural networks.☆27Updated 8 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- machine learning applications for dadi☆15Updated 7 months ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆29Updated 10 months ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Automated and distributed population genetic model inference from allele frequency spectra☆18Updated 2 weeks ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 months ago
- R code to compute the Singleton Density Score (SDS)☆31Updated 8 years ago
- ARG-based inference of selection using deep learning☆18Updated 2 years ago
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆50Updated 4 months ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆65Updated last month
- Repository for pipeline code☆26Updated last year
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 4 months ago
- Perform GWAS with gemma in a simple pipeline☆26Updated 4 months ago
- Sweep Inference Framework (controlling for correlation)☆29Updated last year
- ☆25Updated last year
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 3 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- R-package: Calculation of haplotype blocks and libraries☆33Updated last month
- Genealogical Estimation of Variant Age (GEVA)☆30Updated 3 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Here we present a method to plot the outputs of RFMIX version 2☆27Updated last year
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Updated this week
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆35Updated last year
- RFMIX - Local Ancestry and Admixture Inference Version 2☆88Updated 2 years ago