Alternatives and similar repositories for palm

Users that are interested in palm are comparing it to the libraries listed below

• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 5 years ago
• gravelLab / tracts
  A set of tools for modelling ancestry patterns along the genome.
  ☆23Updated this week
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆43Updated 6 years ago
• LohmuellerLab / fitdadi
  Tools for inference of the DFE with dadi
  ☆14Updated 4 years ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆30Updated 2 months ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated last year
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆23Updated 3 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆56Updated 5 months ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 7 years ago
• CshlSiepelLab / arg-selection
  ARG-based inference of selection using deep learning
  ☆18Updated 2 years ago
• ulasisik / balancing-selection
  ☆13Updated 4 years ago
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆29Updated last year
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated last year
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆34Updated 4 years ago
• yairf / SDS
  R code to compute the Singleton Density Score (SDS)
  ☆31Updated 9 years ago
• evotools / hapbin
  Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)
  ☆45Updated 6 years ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆18Updated 8 years ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆31Updated 4 years ago
• stschiff / GAworkshop
  Genome Analysis Workshop (Jena 2016) material
  ☆18Updated 8 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆52Updated 7 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• Popgen48 / scalepopgen
  ☆25Updated last year
• lntran26 / donni
  machine learning applications for dadi
  ☆16Updated 10 months ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆49Updated 4 months ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆65Updated last month
• xin-huang / dadi-cli
  Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra
  ☆18Updated last week
• jaredgk / PPP
  Repository for pipeline code
  ☆26Updated last year
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆34Updated last month
• kr-colab / shIC
  The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps
  ☆14Updated 4 years ago