Alternatives and similar repositories for palm:

Users that are interested in palm are comparing it to the libraries listed below

• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 4 years ago
• gravelLab / tracts
  A set of tools for modelling ancestry patterns along the genome.
  ☆22Updated 2 months ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 3 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• LohmuellerLab / fitdadi
  Tools for inference of the DFE with dadi
  ☆14Updated 3 years ago
• yairf / SDS
  R code to compute the Singleton Density Score (SDS)
  ☆28Updated 8 years ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆28Updated 3 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆57Updated 4 months ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆28Updated last year
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆33Updated 3 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆49Updated 2 months ago
• tsackton / linked-selection
  ☆24Updated 7 years ago
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆14Updated 4 years ago
• Popgen48 / scalepopgen
  ☆23Updated last year
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆42Updated this week
• KosukeHamazaki / RAINBOWR
  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
  ☆22Updated 4 months ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated 11 months ago
• hellenthal-group-UCL / fastGLOBETROTTER
  faster haplotype-based admixture inference and dating software
  ☆9Updated 3 years ago
• lstevison / vcf-conversion-tools
  Tools to convert to and from vcf format
  ☆14Updated 7 years ago
• jaredgk / PPP
  Repository for pipeline code
  ☆24Updated last year
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆30Updated last week
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆33Updated last year
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆32Updated last year
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆26Updated 6 years ago
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated 8 months ago
• lntran26 / donni
  machine learning applications for dadi
  ☆14Updated 2 months ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆29Updated 5 months ago
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆17Updated 5 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 3 years ago