samebdon / heRhoLinks
heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412
☆10Updated 3 months ago
Alternatives and similar repositories for heRho
Users that are interested in heRho are comparing it to the libraries listed below
Sorting:
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 9 months ago
- A genome-wide IM blockwise likelihood estimation toolkit☆17Updated last year
- predicting DFE and alpha from polymorphism data☆28Updated 7 years ago
- ☆21Updated last year
- The integrated Sequentially Markovian Coalescent☆15Updated last week
- Sampling and inference of genealogies with recombination☆47Updated 5 months ago
- ☆31Updated 2 years ago
- Analyze and simulate Pool-Seq time series data☆17Updated 3 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆56Updated 5 months ago
- ☆13Updated 4 years ago
- Infer demographic history with the Moran model☆50Updated 6 months ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 6 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Updated this week
- Software for detecting introgression using supervised machine learning☆21Updated 3 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Updated 2 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- ☆42Updated 2 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- ☆46Updated last month
- Scripts for population genetics analysis☆20Updated 3 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Software for ancestry estimation in unrelated individuals☆21Updated last week
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago