BoPeng / simuPOPLinks
A general-purpose forward-time population genetics simulation environment.
☆35Updated 4 months ago
Alternatives and similar repositories for simuPOP
Users that are interested in simuPOP are comparing it to the libraries listed below
Sorting:
- R markdown file to extract list of collaborators and affiliations from pubmed for NSF biosketch☆38Updated 8 years ago
- Response to blog post about Salmon☆37Updated 8 years ago
- Module for analysing admixture graphs☆28Updated 7 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆57Updated 10 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- Analysis of inference methods on standard population models☆25Updated 3 years ago
- initial commit☆26Updated 2 years ago
- Clustering phylogenetic trees with python☆26Updated last year
- genotype dimensionality reduction with a VAE☆46Updated 6 months ago
- simple examples of using supervised machine learning for population genetics inference☆38Updated 7 years ago
- ☆20Updated 5 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Updated 2 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- starmie: plotting and inference for population structure models☆14Updated 7 years ago
- [mu]tation [s]pectrum [h]istory [i]nference☆26Updated 8 months ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- ☆18Updated 9 years ago
- Effective Computing—Resources for Computational Biologists☆26Updated 5 years ago
- deep learning prediction of geographic location from individual genome sequences☆51Updated 8 months ago
- Guide to transcriptome assembly & analysis☆21Updated 8 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆87Updated 6 years ago
- method for modeling continuous and discrete population genetic structure☆36Updated last year
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- Evolutionary Transcriptomics with R☆45Updated 3 weeks ago
- R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)☆108Updated 3 weeks ago
- Repo to analyze population genetic data with many different methods☆15Updated 5 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago