BoPeng / simuPOPLinks
A general-purpose forward-time population genetics simulation environment.
☆35Updated 3 weeks ago
Alternatives and similar repositories for simuPOP
Users that are interested in simuPOP are comparing it to the libraries listed below
Sorting:
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆54Updated 9 years ago
- Automatically exported from code.google.com/p/macs☆16Updated 5 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated last year
- deep learning prediction of geographic location from individual genome sequences☆50Updated 4 months ago
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆42Updated last month
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- genotype dimensionality reduction with a VAE☆45Updated 2 months ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆50Updated this week
- Python library to simulate evolutionary sequence data☆78Updated 3 years ago
- Forward-time simulation in Python using fwdpp☆30Updated last month
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 2 weeks ago
- ☆43Updated 2 months ago
- R markdown file to extract list of collaborators and affiliations from pubmed for NSF biosketch☆38Updated 7 years ago
- Tools for dealing with tree sequences coming to and from SLiM.☆27Updated 2 weeks ago
- Module for analysing admixture graphs☆28Updated 7 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 4 years ago
- Analysis of inference methods on standard population models☆25Updated 3 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- Clustering phylogenetic trees with python☆25Updated 9 months ago
- Guide to transcriptome assembly & analysis☆21Updated 8 years ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆29Updated 7 months ago
- The Ross-Ibarra's lab documentation☆26Updated 2 years ago
- Methods for examining PCA locally along the genome.☆80Updated 9 months ago
- ☆30Updated 2 years ago
- snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.☆19Updated last year
- R package for pedigree inference based on SNP data☆26Updated 11 months ago
- SNP genotyping in polyploids☆17Updated 4 years ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆51Updated 2 months ago