BoPeng / simuPOP
A general-purpose forward-time population genetics simulation environment.
β31Updated 2 months ago
Related projects β
Alternatives and complementary repositories for simuPOP
- Population genetic simulations in R πβ55Updated this week
- R markdown file to extract list of collaborators and affiliations from pubmed for NSF biosketchβ38Updated 7 years ago
- Work for the tree sequence inference paper.β23Updated 4 years ago
- deep learning prediction of geographic location from individual genome sequencesβ46Updated 2 months ago
- Automatically exported from code.google.com/p/macsβ16Updated 5 years ago
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itselfβ42Updated last month
- Pipeline to take VCF through to Selection Analysis.β58Updated last year
- Maximum likelihood demultiplexingβ46Updated last year
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic frameworkβ45Updated last year
- Module for analysing admixture graphsβ28Updated 6 years ago
- Effective ComputingβResources for Computational Biologistsβ24Updated 4 years ago
- Pdfs of slides from 2018 popgen courseβ35Updated 5 years ago
- simple examples of using supervised machine learning for population genetics inferenceβ38Updated 7 years ago
- Utilities for analyzing next generation sequencing dataβ17Updated 6 years ago
- Shiny apps for teaching Population Geneticsβ59Updated last year
- adds sample names and read-group (RG) tags to BAM alignmentsβ52Updated 3 years ago
- Tools for inference of the DFE with dadiβ14Updated 3 years ago
- GWAS software that can handle autopolyploidsβ26Updated last month
- software for the MAPS methodβ24Updated 5 years ago
- [mu]tation [s]pectrum [h]istory [i]nferenceβ24Updated 2 years ago
- Python library to simulate evolutionary sequence dataβ78Updated 2 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustmentβ21Updated 3 months ago
- Method for dating admixture in ancient DNA specimensβ26Updated 2 years ago
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogiesβ16Updated 4 years ago
- Perform GWAS using the FarmCPU model.β22Updated 2 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohortsβ41Updated 5 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panelsβ53Updated 2 weeks ago
- A toolkit for annotation of transposable element families from unassembled sequence readsβ31Updated last year
- Bayesian hierarchical model for complex trait analysisβ44Updated 9 months ago
- Fast inference of fine-scale recombination rates based on fused-LASSOβ44Updated 5 months ago