XZouProjects / scCODE
The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data
☆13Updated last year
Alternatives and similar repositories for scCODE:
Users that are interested in scCODE are comparing it to the libraries listed below
- Deconvolution of spatial transcriptomics at single-cell resolution☆14Updated 4 months ago
- ☆17Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆29Updated last month
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Ordering gene-expression and functional events in single-cell experiments☆20Updated 10 months ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- ☆15Updated last year
- ☆13Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- ☆12Updated 7 months ago
- ☆22Updated last year
- HCC single cell analysis for Alvarez, Benhammou et al.☆16Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆52Updated 3 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 4 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆22Updated this week
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- ☆19Updated 8 months ago
- R tools for analysis and visualization of single-cell subclustering data☆15Updated 8 months ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆9Updated last year
- ☆15Updated last year
- ☆10Updated last year
- ☆16Updated 10 months ago
- ☆15Updated 3 years ago
- Integration of gut cell atlases☆15Updated last month
- UHCA☆11Updated last month
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆19Updated 2 years ago
- ☆26Updated last year
- A record of the analysis pipelines used to create the HTAPP data☆31Updated last month
- Code used to process the data of the HBCA project☆22Updated 11 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated last month