XZouProjects / scCODELinks
The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data
☆13Updated last year
Alternatives and similar repositories for scCODE
Users that are interested in scCODE are comparing it to the libraries listed below
Sorting:
- Deconvolution of spatial transcriptomics at single-cell resolution☆17Updated 9 months ago
- ☆16Updated 4 years ago
- ☆9Updated 11 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- ☆22Updated 2 years ago
- ☆16Updated last year
- R tools for analysis and visualization of single-cell subclustering data☆16Updated last year
- ☆13Updated 7 months ago
- ☆17Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 6 months ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 3 months ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆15Updated 6 months ago
- ☆17Updated 9 months ago
- ☆12Updated last year
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆22Updated 3 years ago
- Code used to process the data of the HBCA project☆27Updated last year
- HCC single cell analysis for Alvarez, Benhammou et al.☆16Updated 3 years ago
- Computational pipeline to process EasySci-RNA data.☆20Updated last year
- ☆10Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 4 months ago
- ☆17Updated last year
- ☆9Updated 11 months ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆14Updated 6 months ago
- Hierarchical Cell Annotation☆20Updated 7 months ago
- R and MATLAB scripts for MAGICAL☆11Updated 11 months ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Updated 2 years ago
- ☆12Updated last year