The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data
☆14Nov 9, 2023Updated 2 years ago
Alternatives and similar repositories for scCODE
Users that are interested in scCODE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Feb 18, 2021Updated 5 years ago
- Accurate and fast cell marker gene identification with COSG☆64Feb 8, 2026Updated 2 months ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Mar 25, 2026Updated 2 weeks ago
- ☆66Aug 2, 2019Updated 6 years ago
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆58Sep 17, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A ggplot extension for drawing smooth non-convex circles around a set of points.☆19May 20, 2024Updated last year
- Bayesian network plot for the enrichment analysis results☆68Oct 2, 2024Updated last year
- Use batch balanced KNN (BBKNN) in R☆13Sep 9, 2025Updated 7 months ago
- Accurate and fast cell marker gene identification with COSG☆58Mar 7, 2026Updated last month
- ☆183May 6, 2025Updated 11 months ago
- scWGCNA☆63Nov 8, 2022Updated 3 years ago
- A R package for advanced single cell data viz☆74Aug 29, 2025Updated 7 months ago
- ☆23Mar 12, 2026Updated 3 weeks ago
- Bostongene cell deconvolution algorithm from RNAseq☆60Jan 15, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Jan 22, 2026Updated 2 months ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Mar 3, 2020Updated 6 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆98Feb 23, 2026Updated last month
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Aug 10, 2023Updated 2 years ago
- The integration of single cell rank-based gene set enrichment analysis☆148Jan 14, 2026Updated 2 months ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 4 years ago
- ☆25Aug 1, 2022Updated 3 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆67Oct 16, 2025Updated 5 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Cell type prioritization in single-cell data☆139Mar 26, 2026Updated 2 weeks ago
- Pan-Cancer Single Cell Classifier☆85May 30, 2024Updated last year
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆130May 29, 2025Updated 10 months ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆54Jan 21, 2026Updated 2 months ago
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- Construct Tumor Transition Zone Microenvironment☆57Jun 25, 2025Updated 9 months ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Dec 22, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Mar 26, 2026Updated 2 weeks ago
- R tools for analysis and visualization of single-cell subclustering data☆18Sep 9, 2025Updated 7 months ago
- R package for robust clustering of single cell RNA sequencing data☆36Mar 25, 2024Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆118Apr 26, 2025Updated 11 months ago
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆16Mar 17, 2026Updated 3 weeks ago
- ☆14Feb 24, 2020Updated 6 years ago