Alternatives and similar repositories for scCODE

Users that are interested in scCODE are comparing it to the libraries listed below

• ZxZhou4150 / Redeconve
  Deconvolution of spatial transcriptomics at single-cell resolution
  ☆20Updated last year
• zgyaru / anti-PD1_ESCC
  ☆17Updated 2 years ago
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆14Updated last year
• CICAMS-Liu-lab / ECGEA
  ☆17Updated 4 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆30Updated 3 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆36Updated 2 months ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆28Updated last year
• LaughneyLab / ContactTracing_tutorial
  ☆17Updated last year
• Teichlab / SKM_ageing_atlas
  ☆13Updated last year
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆39Updated 5 years ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago
• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆17Updated last year
• jig4003 / Ragas
  R tools for analysis and visualization of single-cell subclustering data
  ☆17Updated 4 months ago
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆26Updated last year
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆26Updated 10 months ago
• wuaipinglab / scImmuCC
  Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.
  ☆10Updated last year
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆34Updated 9 months ago
• sdentro / copykat_pipeline
  ☆13Updated last year
• LuChenLab / inferCC
  Lung cancer 10X analysis
  ☆11Updated 5 years ago
• zhang-bin-98 / A-spatial-transcriptome-landscape-of-mouse-aging
  ☆16Updated last year
• AndersonHu85 / ccRCC_multiomics
  ☆17Updated 2 years ago
• stephenslab / gbcd
  R package for generalized binary covariance decomposition.
  ☆13Updated 6 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆61Updated 2 years ago
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆20Updated 2 months ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆22Updated 2 years ago
• Jonyyqn / scMalignantFinder
  scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…
  ☆16Updated last month
• Coolgenome / GastricCancer
  ☆12Updated last year
• liuqivandy / SpaGene
  ☆25Updated 2 years ago