Alternatives and similar repositories for scCODE:

Users that are interested in scCODE are comparing it to the libraries listed below

• ZxZhou4150 / Redeconve
  Deconvolution of spatial transcriptomics at single-cell resolution
  ☆17Updated 6 months ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• LuChenLab / inferCC
  Lung cancer 10X analysis
  ☆11Updated 4 years ago
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• qingnanl / gsdensity
  ☆9Updated 9 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆24Updated 3 years ago
• zgyaru / anti-PD1_ESCC
  ☆17Updated last year
• LaughneyLab / ContactTracing_tutorial
  ☆17Updated 6 months ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 4 months ago
• kaifuchenlab / MEBOCOST
  ☆16Updated 10 months ago
• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated last month
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago
• Olaniru / human-fetal-pancreas
  analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages
  ☆10Updated 2 years ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆21Updated last year
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆26Updated last year
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆19Updated 3 weeks ago
• soumelis-lab / ICELLNET
  ☆19Updated 11 months ago
• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆16Updated 2 years ago
• miccec / yaGST
  ☆13Updated 7 years ago
• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆14Updated 3 years ago
• ChanghanGitHub / exFINDER
  Identifying external communication signals using single-cell transcriptomics data
  ☆20Updated 10 months ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 5 years ago
• yandgong307 / human_macrophage_project
  scripts for analyzing data of macrophage development in human
  ☆10Updated 5 years ago
• TheHumphreysLab / Mouse_DKD_Rx_Atlas
  ☆16Updated 3 years ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆27Updated 4 months ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆21Updated last year