Alternatives and similar repositories for ImmuneLENS

Users that are interested in ImmuneLENS are comparing it to the libraries listed below

• gxiaolab / scAllele
  ☆39Updated 5 months ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆32Updated 3 years ago
• UMCUGenetics / primary-met-wgs-comparison
  Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
  ☆18Updated 2 years ago
• UPSUTER / GEMLI
  ☆33Updated last year
• CICAMS-Liu-lab / ECGEA
  ☆18Updated 4 years ago
• wenweixiong / MARVEL
  ☆53Updated last year
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆13Updated 3 years ago
• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆17Updated last year
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆32Updated 10 months ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆29Updated last year
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated 2 years ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆13Updated 3 years ago
• AndersonHu85 / ccRCC_multiomics
  ☆17Updated 2 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆30Updated 3 years ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆58Updated 3 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 10 months ago
• McGranahanLab / TcellExTRECT
  ☆48Updated last year
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆26Updated 3 years ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆17Updated 2 years ago
• yunshun / HumanBreast10X
  ☆28Updated 4 years ago
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆34Updated 9 months ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆26Updated last year
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆44Updated 4 years ago
• WanluLiuLab / scAtlasVAE
  ☆41Updated 7 months ago
• lusystemsbio / NetAct
  Network construction Algorithm
  ☆22Updated last year
• aiminXie / scPAS
  A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data
  ☆17Updated 2 weeks ago
• horsedayday / eQTLsingle
  ☆15Updated 2 years ago
• jig4003 / Ragas
  R tools for analysis and visualization of single-cell subclustering data
  ☆17Updated 4 months ago
• guokai8 / rcellmarker
  Identify cell type based on cell markers for single cell squencing
  ☆11Updated last year