A public MuSpAn page for community discussions and issue reporting.
☆21May 21, 2026Updated 3 weeks ago
Alternatives and similar repositories for MuSpAn-Public
Users that are interested in MuSpAn-Public are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14May 13, 2026Updated last month
- ☆28May 21, 2026Updated 3 weeks ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆30Jun 1, 2026Updated last week
- A template for Python projects using cookiecutter☆13Jun 2, 2026Updated last week
- cgat-flow repository☆16May 10, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Spatial omics analysis and visualization library☆24Updated this week
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆37Feb 10, 2025Updated last year
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 6 months ago
- ☆13Jul 18, 2025Updated 10 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆249Mar 14, 2026Updated 2 months ago
- Spatial transcriptomics analyses and decoding in R☆25Oct 23, 2025Updated 7 months ago
- ☆37Oct 22, 2025Updated 7 months ago
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆37May 19, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Profile purification of single-cell spatial transcriptomics data☆46May 28, 2026Updated 2 weeks ago
- ☆13Jan 18, 2023Updated 3 years ago
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆49Oct 22, 2025Updated 7 months ago
- Initial Commit☆18May 24, 2020Updated 6 years ago
- ☆17Sep 13, 2024Updated last year
- ☆94Updated this week
- Medea: An omics AI agent for therapeutic discovery☆108Mar 26, 2026Updated 2 months ago
- Hyper-AdaC: Adaptive clustering-based hypergraph representation of whole slide images for survival analysis☆16Nov 28, 2022Updated 3 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆28Sep 20, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆39May 31, 2026Updated last week
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 3 years ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆26Jan 31, 2026Updated 4 months ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Jan 20, 2022Updated 4 years ago
- An R package designed to demultiplex cell hashing data☆32Updated this week
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- ☆34Feb 25, 2025Updated last year
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆13Feb 24, 2025Updated last year
- A spectral method for assessing and combining multiple data visualizations☆50Jul 20, 2023Updated 2 years ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆17Nov 30, 2024Updated last year
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- ☆56Oct 29, 2022Updated 3 years ago
- Single cell proteomics data processing☆32Apr 6, 2026Updated 2 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆37Aug 7, 2023Updated 2 years ago