Alternatives and similar repositories for MuSpAn-Public

Users that are interested in MuSpAn-Public are comparing it to the libraries listed below

• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 9 months ago
• AI4SCR / ATHENA
  ☆35Updated last week
• jian-shu-lab / Bering
  ☆24Updated 7 months ago
• amesch441 / iSCALE
  Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms
  ☆38Updated 3 weeks ago
• ElementoLab / utag
  ☆39Updated last year
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆25Updated last year
• LiHongCSBLab / SOAPy
  ☆31Updated 8 months ago
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago
• BiomedicalMachineLearning / Spacell
  ☆27Updated 5 years ago
• Banovich-Lab / Spatial_PF
  ☆31Updated 3 weeks ago
• dpeerlab / ENVI
  ☆50Updated last month
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆27Updated 5 years ago
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆30Updated 3 months ago
• Flashiness / METI
  Morphology-Enhanced Spatial Transcriptome Analysis Integrator
  ☆26Updated 7 months ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆61Updated 2 weeks ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆30Updated last year
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆21Updated 3 months ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆91Updated last year
• huBioinfo / CytoCommunity
  A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …
  ☆26Updated 7 months ago
• camlab-bioml / starling
  Segmentation error aware clustering for multiplexed imaging
  ☆19Updated 10 months ago
• nolanlab / NeighborhoodCoordination
  Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…
  ☆68Updated last year
• FrancisCrickInstitute / TRACERx-PHLEX
  Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging
  ☆13Updated 3 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆57Updated 4 months ago
• jianhuupenn / TESLA
  Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA
  ☆62Updated last year
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆63Updated 4 months ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆33Updated 7 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆40Updated 8 months ago
• wanglab-broad / CAST
  CAST package
  ☆40Updated last year
• nolanlab / SpatialScore
  R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…
  ☆16Updated 4 years ago
• 10XGenomics / janesick_nature_comms_2023_companion
  Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…
  ☆28Updated last year