Alternatives and similar repositories for MuSpAn-Public:

Users that are interested in MuSpAn-Public are comparing it to the libraries listed below

• Banovich-Lab / Spatial_PF
  ☆24Updated last month
• LiHongCSBLab / SOAPy
  ☆26Updated last month
• wanglab-broad / CAST
  CAST package
  ☆33Updated 5 months ago
• jian-shu-lab / Bering
  ☆16Updated 2 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆34Updated last month
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆16Updated last year
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆21Updated 8 months ago
• bm2-lab / SpaDo
  Multi-slice Spatial Transcriptome Domain Analysis.
  ☆11Updated 3 months ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆27Updated last year
• katherine-benjamin / topact-paper
  Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"
  ☆10Updated 11 months ago
• davidliwei / PS
  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…
  ☆12Updated 11 months ago
• nolanlab / SpatialScore
  R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…
  ☆14Updated 3 years ago
• dpeerlab / ENVI
  ☆46Updated last week
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆33Updated 3 weeks ago
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆18Updated 3 months ago
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆17Updated this week
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆14Updated last month
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆35Updated 4 months ago
• BodenmillerGroup / imcRtools
  An R package for handling and analysing imaging mass cytometry data
  ☆24Updated 5 months ago
• almaan / eggplant
  ☆21Updated 2 years ago
• tudaga / LabelCorrection
  Python code for cross-condition label refinement in single-cell data with HiDDEN
  ☆11Updated 6 months ago
• welch-lab / cytosignal
  ☆17Updated this week
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 3 years ago
• CamaraLab / STvEA
  Spatially-resolved Transcriptomics via Epitope Anchoring
  ☆18Updated last year
• mbernste / SpatialCorr
  SpatialCorr: Identify gene sets with spatially varying correlation
  ☆16Updated last year
• TrigosTeam / SPIAT
  ☆22Updated 3 weeks ago
• ding-lab / mushroom
  A computational tool for identification of 3D multi-modal spatial neighborhoods
  ☆11Updated 2 months ago
• Sanofi-Public / spatialone-pipeline
  Spatial One
  ☆24Updated 5 months ago
• elo073 / 5loclung
  Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung
  ☆11Updated last year
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆36Updated 2 weeks ago