Alternatives and similar repositories for MuSpAn-Public

Users that are interested in MuSpAn-Public are comparing it to the libraries listed below

• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆25Updated last year
• jian-shu-lab / Bering
  ☆25Updated 9 months ago
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆34Updated 5 months ago
• ElementoLab / utag
  ☆40Updated this week
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago
• AI4SCR / ATHENA
  ☆35Updated this week
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 11 months ago
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆38Updated last year
• LiHongCSBLab / SOAPy
  ☆32Updated 10 months ago
• dpeerlab / ENVI
  ☆52Updated 3 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆56Updated 6 months ago
• Flashiness / METI
  Morphology-Enhanced Spatial Transcriptome Analysis Integrator
  ☆27Updated 9 months ago
• jianhuupenn / TESLA
  Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA
  ☆64Updated last year
• camlab-bioml / starling
  Segmentation error aware clustering for multiplexed imaging
  ☆19Updated last year
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆106Updated last week
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆93Updated 2 years ago
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆27Updated 6 years ago
• Banovich-Lab / Spatial_PF
  ☆34Updated 2 months ago
• amesch441 / iSCALE
  Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms
  ☆42Updated 2 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆41Updated 10 months ago
• wollmanlab / JSTA
  ☆15Updated 3 years ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆48Updated 2 months ago
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆73Updated last year
• cancerbioinformatics / CosMx_Lite
  ☆10Updated last year
• BodenmillerGroup / readimc
  Python package for reading imaging mass cytometry (IMC) files
  ☆18Updated 3 weeks ago
• BodenmillerGroup / IMCDataAnalysis
  R based workflow for multiplexed imaging data
  ☆36Updated 6 months ago
• nolanlab / NeighborhoodCoordination
  Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…
  ☆70Updated last year
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆21Updated 5 months ago
• CellProfiling / pipex
  A pipeline to transform images into valuable analysis items
  ☆17Updated 6 months ago
• 10XGenomics / janesick_nature_comms_2023_companion
  Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…
  ☆29Updated 2 years ago