YosefLab / SymSimLinks
☆26Updated 8 months ago
Alternatives and similar repositories for SymSim
Users that are interested in SymSim are comparing it to the libraries listed below
Sorting:
- ☆45Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ACTIONet single-cell analysis framework☆41Updated 9 months ago
- ☆11Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 5 months ago
- Benchmark of GRNs using the GRETA pipeline☆24Updated 3 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Geometry-preserving random sampling☆87Updated 7 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- ☆47Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- ☆23Updated last month
- ☆26Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆111Updated last year
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆42Updated last year
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆44Updated 5 years ago
- ☆16Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- ☆28Updated last month
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- A method for analyzing scATAC-seq experiments.☆31Updated 3 months ago
- Population balance analysis☆44Updated 6 years ago
- spatial transcriptome, single cell☆68Updated 2 years ago