Alternatives and similar repositories for SymSim

Users that are interested in SymSim are comparing it to the libraries listed below

• zcang / SpaOTsc
  ☆45Updated last week
• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 6 years ago
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆26Updated this week
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆63Updated 3 weeks ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆48Updated 6 months ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated 2 years ago
• AllonKleinLab / cospar
  ☆26Updated last year
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆43Updated 2 years ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆56Updated last year
• AltschulerWu-Lab / scScope
  ☆48Updated 6 years ago
• klarman-cell-observatory / scPhere
  ☆100Updated 2 years ago
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆113Updated last year
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆89Updated 9 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆68Updated 2 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆77Updated last year
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated 10 months ago
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆111Updated 8 months ago
• dpeerlab / magic
  MAGIC - imputation and de-noising single-cell RNA seq data sets
  ☆27Updated 5 years ago
• bowang-lab / DeepVelo
  ☆46Updated last year
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 4 years ago
• rajewsky-lab / novosparc
  ☆131Updated last year
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆110Updated 9 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆36Updated 2 years ago
• JSB-UCLA / scDesign2
  An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated
  ☆25Updated 9 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• thomasmaxwellnorman / Perturbseq_GI
  Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
  ☆57Updated 5 years ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆28Updated 2 years ago
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago