YosefLab / SymSimLinks
☆26Updated 8 months ago
Alternatives and similar repositories for SymSim
Users that are interested in SymSim are comparing it to the libraries listed below
Sorting:
- ☆45Updated 2 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- ACTIONet single-cell analysis framework☆41Updated 8 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆47Updated 4 months ago
- ☆11Updated 2 years ago
- ☆26Updated last year
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- Population balance analysis☆44Updated 6 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Benchmark of GRNs using the GRETA pipeline☆24Updated 2 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆34Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- ☆23Updated 3 weeks ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- A method for analyzing scATAC-seq experiments.☆30Updated 2 months ago
- ☆40Updated last week
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆110Updated last year
- A python package for chromVAR☆28Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- ☆26Updated last week
- An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated☆25Updated 7 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- Geometry-preserving random sampling☆82Updated 7 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆42Updated 8 months ago