YosefLab / SymSimLinks
☆26Updated last year
Alternatives and similar repositories for SymSim
Users that are interested in SymSim are comparing it to the libraries listed below
Sorting:
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆45Updated 4 months ago
- Quasilinear data representations for single-cell omics data analysis☆44Updated 2 years ago
- Population balance analysis☆44Updated 6 years ago
- Benchmark of GRNs using the GRETA pipeline☆29Updated this week
- ACTIONet single-cell analysis framework☆44Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- Multi-omic velocity inference☆113Updated last year
- ☆48Updated 6 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- ☆12Updated 2 years ago
- ☆101Updated 2 years ago
- Geometry-preserving random sampling☆95Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆50Updated 10 months ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆65Updated 5 years ago
- spatial transcriptome, single cell☆71Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆115Updated last year
- ☆26Updated last year
- Simulating single-cell data using gene regulatory networks 📠☆77Updated last year
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆63Updated last year
- A collection of scripts and tools for loading, processing, and handling single cell data.☆77Updated 2 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆39Updated 2 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆45Updated 5 years ago
- MultiMAP for integration of single cell multi-omics☆55Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆69Updated 2 years ago
- Single-cell RNA-seq Gene Expression Recovery☆111Updated last year
- Non-parametric density inference for single-cell analysis.☆73Updated 6 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago