YosefLab / SymSimLinks
☆26Updated last year
Alternatives and similar repositories for SymSim
Users that are interested in SymSim are comparing it to the libraries listed below
Sorting:
- ☆45Updated 5 months ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆65Updated 5 years ago
- ☆101Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Population balance analysis☆44Updated 6 years ago
- Geometry-preserving random sampling☆95Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆51Updated 11 months ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- ☆48Updated 6 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 5 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 2 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 3 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- Benchmark of GRNs using the GRETA pipeline☆30Updated last week
- Single-cell RNA-seq Gene Expression Recovery☆112Updated last year
- spatial transcriptome, single cell☆73Updated 2 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆28Updated 4 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- ☆46Updated last year
- Multi-omic velocity inference☆113Updated last year
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆63Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆39Updated 2 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆46Updated 2 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆116Updated last year
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago