Alternatives and similar repositories for SymSim

Users that are interested in SymSim are comparing it to the libraries listed below

• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆27Updated this week
• zcang / SpaOTsc
  ☆45Updated last month
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated 11 months ago
• AltschulerWu-Lab / scScope
  ☆48Updated 6 years ago
• klarman-cell-observatory / scPhere
  ☆101Updated 2 years ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆48Updated 7 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆63Updated last month
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆89Updated 10 months ago
• thomasmaxwellnorman / Perturbseq_GI
  Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
  ☆58Updated 5 years ago
• dpeerlab / magic
  MAGIC - imputation and de-noising single-cell RNA seq data sets
  ☆27Updated 5 years ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆37Updated 2 years ago
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆33Updated 2 months ago
• soedinglab / prosstt
  PRObabilistic Simulations of ScRNA-seq Tree-like Topologies
  ☆26Updated last year
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated 2 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 6 years ago
• AllonKleinLab / cospar
  ☆26Updated last year
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆43Updated 2 years ago
• bowang-lab / DeepVelo
  ☆46Updated last year
• zhanglhbioinfor / DIRECT-NET
  ☆11Updated 2 years ago
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆111Updated 9 months ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆56Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆66Updated 2 years ago
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆25Updated 2 years ago
• lcmmichielsen / scHPL
  ☆35Updated 5 months ago
• shmohammadi86 / SCINET
  ☆18Updated 4 years ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆40Updated 11 months ago
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆77Updated last year
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆110Updated 10 months ago