Causal and probabilistic reasoning with continuous time dynamical systems
☆21Aug 29, 2025Updated 10 months ago
Alternatives and similar repositories for pyciemss
Users that are interested in pyciemss are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An experimental language for causal reasoning☆272Updated this week
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- An accurate and efficient colocalization method accounting for multiple causal signals☆14Jun 3, 2024Updated 2 years ago
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 2 months ago
- Analysis workflow for investigating the structural context of PTMs☆11Jan 8, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Population Based Training of Petri Dish Neural Cellular Automata☆16Apr 14, 2026Updated 3 months ago
- Information sharing portal about nCov/SARS/MERS for drug discovery☆38Oct 8, 2024Updated last year
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 7 years ago
- Release of the whole cell E. coli model.☆76Dec 10, 2024Updated last year
- Computation of Microbial Ecosystems in Time and Space☆28May 5, 2026Updated 2 months ago
- Rule-based modeling framework☆70Updated this week
- Python package for creating, calibrating and simulating RBA models☆14Apr 8, 2026Updated 3 months ago
- Registry of containerized biosimulation tools that support a standard command-line interface☆15Updated this week
- Whole cell model of E. coli implemented with Vivarium☆30Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ❓y0 (pronounced "why not?") is for causal inference in Python☆72Jul 12, 2026Updated last week
- Fast Inference of Networks from Directed Regulations☆23Dec 7, 2023Updated 2 years ago
- ☆17Jun 10, 2026Updated last month
- Martini Workshop: Simulating a Minimal Bacterial Cell☆16May 13, 2024Updated 2 years ago
- ☆15Dec 20, 2020Updated 5 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Oct 4, 2021Updated 4 years ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Jul 27, 2023Updated 2 years ago
- Official code repository to the corresponding paper.☆29Sep 14, 2023Updated 2 years ago
- R package for functionally scoring phosphorylation sites☆22Nov 3, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of ma…☆48Feb 6, 2026Updated 5 months ago
- A tool for semantics-based annotation and composition of biosimulation models☆20Jun 24, 2026Updated 3 weeks ago
- cfid: R package for identifying counterfactuals.☆11Dec 11, 2025Updated 7 months ago
- ☆12Jan 27, 2022Updated 4 years ago
- Pipeline for protein-protein interaction prediction☆27Feb 22, 2022Updated 4 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27May 3, 2023Updated 3 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆39Jan 11, 2019Updated 7 years ago
- ☆27Updated this week
- An experimental package for deep learning for molecular docking☆21Mar 21, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- All notes presented by me and others at a weekly reading group.☆11Aug 26, 2020Updated 5 years ago
- The pygformula implements the parametric g-formula in Python. The parametric g-formula (Robins, 1986) uses longitudinal data with time-va…☆33May 22, 2026Updated 2 months ago
- NeurIPS 2020 Spotlight Paper☆13Dec 20, 2021Updated 4 years ago
- Software used for papers published by CAUSALab members☆12Oct 23, 2025Updated 8 months ago
- Code for ICML 2021 paper "Regularizing towards Causal Invariance: Linear Models with Proxies" (ICML 2021)☆11Mar 14, 2022Updated 4 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 5 months ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆18May 11, 2026Updated 2 months ago