AllenInstitute / MTG_celltypes
Human cortical cell types
☆24Updated 5 years ago
Alternatives and similar repositories for MTG_celltypes:
Users that are interested in MTG_celltypes are comparing it to the libraries listed below
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆44Updated last year
- ☆49Updated 7 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆36Updated 3 weeks ago
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆24Updated 6 years ago
- ☆46Updated 11 months ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆15Updated last year
- Analysis pipeline for the adolescent mouse nervous system project☆24Updated 6 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- Nonnegative spatial factorization for multivariate count data☆57Updated last year
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆60Updated this week
- ☆28Updated 2 years ago
- An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated☆25Updated 4 months ago
- Individual level Differential Expression Analysis for Single cells☆23Updated 2 years ago
- ☆21Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated 2 weeks ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Updated last year
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆59Updated this week
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆24Updated 4 years ago
- ☆38Updated 3 months ago
- Single-cell Hierarchical Poisson Factorization☆68Updated 2 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Updated 6 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Updated 5 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Alignability testing and integration of single-cell data☆21Updated last year
- CeSpGRN: Inferring cell specific GRN using single-cell gene expression data☆21Updated 11 months ago
- An r package that works as a wrapper to homologene☆43Updated last year
- Regulatory networks with Direct Information☆16Updated 5 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆26Updated last month