Alternatives and similar repositories for NHPCA

Users that are interested in NHPCA are comparing it to the libraries listed below

• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆36Updated 3 months ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆28Updated 3 years ago
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• yingyonghui / CommPath
  R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics
  ☆38Updated 11 months ago
• Teichlab / SKM_ageing_atlas
  ☆13Updated last year
• horsedayday / eQTLsingle
  ☆15Updated 2 years ago
• califano-lab / single-cell-pipeline
  ☆50Updated 6 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆40Updated 5 years ago
• yliuup / NPC-TLS
  ☆13Updated last year
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆39Updated 5 years ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆46Updated 2 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆31Updated 2 years ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆18Updated 2 years ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆73Updated 5 months ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆28Updated last year
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆33Updated 3 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated last year
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• sunnyzwu / stromal_subclasses
  code for data processing and visualisation associated with the stromal subclasses manuscript
  ☆13Updated 5 years ago
• KellisLab / AD_regulome_analysis
  AD regulome analysis
  ☆14Updated 2 years ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated last year
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆49Updated 9 months ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆29Updated 4 years ago
• zgyaru / anti-PD1_ESCC
  ☆17Updated 2 years ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆41Updated 2 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆81Updated 6 months ago
• youqiongye / CRC_scRNAseq
  ☆49Updated 3 years ago
• jig4003 / Ragas
  R tools for analysis and visualization of single-cell subclustering data
  ☆17Updated 5 months ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆17Updated 2 years ago