Python library to access Gene Expression Omnibus Database (GEO)
☆162Jul 27, 2024Updated last year
Alternatives and similar repositories for GEOparse
Users that are interested in GEOparse are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GE…☆11Aug 1, 2021Updated 4 years ago
- Gene Set Enrichment Analysis in Python☆703Jun 25, 2026Updated 2 weeks ago
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆30Jul 1, 2026Updated last week
- Builds a PEP from SRA or GEO accessions☆55Apr 12, 2026Updated 2 months ago
- Differential expression analysis for single-cell RNA-seq data.☆206Oct 21, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆46Updated this week
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆99Jan 14, 2025Updated last year
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Jul 12, 2023Updated 2 years ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆139Dec 15, 2022Updated 3 years ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,501Updated this week
- Event page: https://www.csc.fi/web/training/-/single-cell-rnaseq-r-2018☆13Sep 24, 2018Updated 7 years ago
- A Python wrapper for the bioRxiv API.☆11Aug 18, 2021Updated 4 years ago
- Normalization of RNA-seq gene expression☆106Jul 8, 2025Updated last year
- Python library to handle Gene Ontology (GO) terms☆898Jun 22, 2026Updated 2 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆18Oct 22, 2024Updated last year
- ☆11Sep 17, 2020Updated 5 years ago
- Cromwell output organizer☆13May 18, 2021Updated 5 years ago
- Python biomart API☆69Jun 17, 2023Updated 3 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- SRA python tools☆11Jun 9, 2021Updated 5 years ago
- Parsing tools for GTF (gene transfer format) files☆128May 13, 2026Updated last month
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆402Updated this week
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆68Apr 5, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- The bridge between the NCBI Gene Expression Omnibus and Bioconductor☆115Jun 16, 2026Updated 3 weeks ago
- A python package for showing JBrowse views☆27Jan 3, 2024Updated 2 years ago
- Python-based preprocessing software for Illumina methylation arrays☆42Aug 17, 2023Updated 2 years ago
- ☆27Sep 26, 2024Updated last year
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Dec 17, 2020Updated 5 years ago
- Gene expression viewer template☆12Aug 30, 2017Updated 8 years ago
- Computational Framework to reconstructing tumor clone structures☆15Mar 31, 2021Updated 5 years ago
- Web site for the class EE 372 : Data Science for High-Throughput Sequencing at Stanford☆67Jan 9, 2022Updated 4 years ago
- A Python package for gene network analysis☆33Jun 22, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆14Dec 18, 2019Updated 6 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,654Updated this week
- Comparison of single cell normalization strategies☆11Aug 13, 2021Updated 4 years ago
- ☆17Jan 6, 2025Updated last year
- Annotated sequence data☆11Feb 2, 2025Updated last year
- muon is a multimodal omics Python framework☆273Jun 22, 2026Updated 2 weeks ago
- Readme☆10Mar 15, 2020Updated 6 years ago