guma44 / GEOparseLinks
Python library to access Gene Expression Omnibus Database (GEO)
☆158Updated last year
Alternatives and similar repositories for GEOparse
Users that are interested in GEOparse are comparing it to the libraries listed below
Sorting:
- Python biomart API☆69Updated 2 years ago
- A python extension for quick access to bigWig and bigBed files☆239Updated 3 weeks ago
- Porting DESeq2 into python via rpy2☆67Updated 2 years ago
- predicting expression effects of human genome variants ab initio from sequence☆132Updated last year
- A Python implementation of edgeR for differential expression analysis☆104Updated 6 years ago
- Parsing tools for GTF (gene transfer format) files☆125Updated 11 months ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆97Updated last year
- TF MOtif Discovery from Importance SCOres☆163Updated last month
- A simple pythonic interface to biomart.☆57Updated 6 years ago
- 🗂️ [vdjdb.com is up and running!] Git-based TCR database storage & management. Submissions welcome!☆150Updated this week
- A scanpy extension to analyse single-cell TCR and BCR data.☆245Updated this week
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆174Updated 3 months ago
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data☆142Updated last year
- Python interface to running command-line and web-based MHC binding predictors☆99Updated last year
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆236Updated 3 weeks ago
- GeneWalk identifies relevant gene functions for a biological context using network representation learning☆133Updated last year
- Jupyter notebook based genomic data visualization toolkit.☆249Updated 2 months ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆157Updated last week
- Tools for manipulating biological data, particularly multiple sequence alignments☆159Updated last week
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Differential expression analysis for single-cell RNA-seq data.☆206Updated 3 months ago
- Python implementation of the Loom file format - http://loompy.org☆148Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆129Updated 5 years ago
- muon is a multimodal omics Python framework☆262Updated 2 weeks ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆399Updated 5 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆96Updated 5 years ago
- MOODS: Motif Occurrence Detection Suite☆113Updated 2 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆246Updated last week
- PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)☆288Updated 11 months ago