dynverse / dyngenLinks
Simulating single-cell data using gene regulatory networks 📠
☆75Updated last year
Alternatives and similar repositories for dyngen
Users that are interested in dyngen are comparing it to the libraries listed below
Sorting:
- ☆102Updated 2 years ago
- A simulator for single-cell expression data guided by gene regulatory networks☆63Updated last year
- A software package for analyzing snapshots of developmental processes☆146Updated 3 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated 2 months ago
- Quantifying experimental perturbations at single cell resolution☆109Updated 11 months ago
- ☆63Updated 2 years ago
- spatial transcriptome, single cell☆69Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆49Updated 8 months ago
- ☆26Updated 11 months ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated 8 months ago
- ☆48Updated 6 years ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Git Repo for simulating Boolean Models☆35Updated last year
- Multi-omic velocity inference☆110Updated 10 months ago
- Geometry-preserving random sampling☆89Updated 10 months ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Updated 6 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Python client for the OmniPath web service☆47Updated 2 months ago
- Global Waddington-OT☆24Updated 5 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- ☆45Updated last month
- Batch balanced KNN☆170Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated☆25Updated 10 months ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆53Updated last year
- Nonnegative spatial factorization for multivariate count data☆59Updated 2 years ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Updated last year
- Population balance analysis☆44Updated 6 years ago