Simulating single-cell data using gene regulatory networks 📠
☆80Apr 1, 2026Updated 2 months ago
Alternatives and similar repositories for dyngen
Users that are interested in dyngen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20May 30, 2022Updated 4 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆28Jan 10, 2024Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 7 years ago
- Cell cycle inference in single-cell RNA-seq☆52Apr 25, 2023Updated 3 years ago
- Single cell analysis tools for expression from RNA-seq in R☆10Feb 3, 2016Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆501Apr 23, 2026Updated last month
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆227Apr 26, 2026Updated last month
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- Predict RNA velocity through deep learning☆72Dec 12, 2023Updated 2 years ago
- Multi-omic velocity inference☆118Oct 23, 2024Updated last year
- ☆13Apr 16, 2021Updated 5 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆22Jun 7, 2021Updated 5 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆297Jun 17, 2025Updated 11 months ago
- ☆14Jul 28, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data☆81Jan 25, 2024Updated 2 years ago
- Quantifying experimental perturbations at single cell resolution☆114Sep 27, 2024Updated last year
- RNA velocity validation☆22Mar 16, 2022Updated 4 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆186Jun 24, 2021Updated 4 years ago
- Publication Page for ArchR Manuscript 2020☆24Aug 17, 2021Updated 4 years ago
- BEELINE: evaluation of algorithms for gene regulatory network inference☆210May 25, 2026Updated 2 weeks ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆113Aug 13, 2020Updated 5 years ago
- Single-cell perturbation analysis☆327Updated this week
- Benchmarking analysis of data integration tools☆423Apr 27, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- ☆17Nov 13, 2021Updated 4 years ago
- ☆50Feb 7, 2024Updated 2 years ago
- Single cell trajectory detection☆316Apr 21, 2026Updated last month
- Comparison of methods for trajectory inference on single-cell data 🥇☆222Aug 30, 2023Updated 2 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆457Feb 18, 2025Updated last year
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 7 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆28Nov 12, 2024Updated last year
- ☆27Dec 25, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- GP Sinkhorn Implementation, paper: https://www.mdpi.com/1099-4300/23/9/1134☆23May 1, 2022Updated 4 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated 3 months ago
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 3 years ago
- consistent quantification of external RNA-seq data sets☆58Dec 21, 2023Updated 2 years ago
- ☆11Dec 8, 2023Updated 2 years ago
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago