Simulating single-cell data using gene regulatory networks 📠
☆80Apr 1, 2026Updated 3 months ago
Alternatives and similar repositories for dyngen
Users that are interested in dyngen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19May 30, 2022Updated 4 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆28Jan 10, 2024Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 7 years ago
- Single cell analysis tools for expression from RNA-seq in R☆10Feb 3, 2016Updated 10 years ago
- Cell cycle inference in single-cell RNA-seq☆51Apr 25, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆505Jul 1, 2026Updated 3 weeks ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆229Jul 2, 2026Updated 3 weeks ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- Multi-omic velocity inference☆120Oct 23, 2024Updated last year
- Predict RNA velocity through deep learning☆72Dec 12, 2023Updated 2 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆22Jun 7, 2021Updated 5 years ago
- ☆13Apr 16, 2021Updated 5 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆306Jun 17, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆14Jul 28, 2023Updated 2 years ago
- Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data☆82Jan 25, 2024Updated 2 years ago
- Quantifying experimental perturbations at single cell resolution☆115Sep 27, 2024Updated last year
- RNA velocity validation☆22Mar 16, 2022Updated 4 years ago
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆23Dec 16, 2025Updated 7 months ago
- Publication Page for ArchR Manuscript 2020☆24Aug 17, 2021Updated 4 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆187Jun 24, 2021Updated 5 years ago
- BEELINE: evaluation of algorithms for gene regulatory network inference☆213Jul 11, 2026Updated 2 weeks ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆115Aug 13, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Benchmarking analysis of data integration tools☆426Apr 27, 2026Updated 2 months ago
- ☆17Nov 13, 2021Updated 4 years ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- ☆51Feb 7, 2024Updated 2 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆462Feb 18, 2025Updated last year
- Single cell trajectory detection☆329Jul 15, 2026Updated last week
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆15Jun 5, 2019Updated 7 years ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆222Aug 30, 2023Updated 2 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆28Nov 12, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Single-cell perturbation analysis☆338Updated this week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated 5 months ago
- ☆27Dec 25, 2023Updated 2 years ago
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 3 years ago
- GP Sinkhorn Implementation, paper: https://www.mdpi.com/1099-4300/23/9/1134☆23May 1, 2022Updated 4 years ago
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- consistent quantification of external RNA-seq data sets☆58Dec 21, 2023Updated 2 years ago