Simulating single-cell data using gene regulatory networks 📠
☆78Feb 21, 2024Updated 2 years ago
Alternatives and similar repositories for dyngen
Users that are interested in dyngen are comparing it to the libraries listed below
Sorting:
- ☆20May 30, 2022Updated 3 years ago
- Multi-omic velocity inference☆116Oct 23, 2024Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 7 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆219Feb 26, 2024Updated 2 years ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆488Feb 20, 2026Updated 2 weeks ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆290Jun 17, 2025Updated 8 months ago
- Cell cycle inference in single-cell RNA-seq☆50Apr 25, 2023Updated 2 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Jan 10, 2024Updated 2 years ago
- RNA velocity validation☆22Mar 16, 2022Updated 3 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆111Aug 13, 2020Updated 5 years ago
- Predict RNA velocity through deep learning☆72Dec 12, 2023Updated 2 years ago
- Global Waddington-OT☆23Mar 25, 2025Updated 11 months ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- ☆13Jul 28, 2023Updated 2 years ago
- ☆12Apr 16, 2021Updated 4 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆30Jan 1, 2025Updated last year
- Benchmarking analysis of data integration tools☆407Sep 17, 2025Updated 5 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆447Feb 18, 2025Updated last year
- Quantifying experimental perturbations at single cell resolution☆113Sep 27, 2024Updated last year
- BEELINE: evaluation of algorithms for gene regulatory network inference☆208Updated this week
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated 2 weeks ago
- ☆26Dec 25, 2023Updated 2 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Jun 24, 2021Updated 4 years ago
- ☆27Sep 26, 2024Updated last year
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Jul 27, 2023Updated 2 years ago
- ☆17Nov 13, 2021Updated 4 years ago
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- Dynamic inference from single-cell snapshots by optimal transport☆20Mar 14, 2024Updated last year
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆27Nov 12, 2024Updated last year
- Single-cell perturbation analysis☆289Updated this week
- A simulator for single-cell expression data guided by gene regulatory networks☆75May 8, 2024Updated last year
- Single cell trajectory detection☆297Feb 14, 2026Updated 2 weeks ago
- A software package for analyzing snapshots of developmental processes☆156Sep 15, 2022Updated 3 years ago
- Reference mapping for single-cell genomics☆399Dec 2, 2025Updated 3 months ago
- ☆48Feb 7, 2024Updated 2 years ago
- Spatial reconstruction of dissociated single-cell data☆19Jan 12, 2024Updated 2 years ago
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 3 years ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆77May 20, 2021Updated 4 years ago