new repo
☆28May 18, 2021Updated 4 years ago
Alternatives and similar repositories for SequelTools
Users that are interested in SequelTools are comparing it to the libraries listed below
Sorting:
- interactive Multi Objective K-mer Analysis☆23Mar 5, 2023Updated 2 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method☆35Aug 1, 2025Updated 7 months ago
- ☆10Mar 24, 2025Updated 11 months ago
- ☆11Nov 21, 2025Updated 3 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated 5 months ago
- ☆19Apr 14, 2024Updated last year
- The shiny app that accompanies the ngsReports R package☆13Jun 10, 2021Updated 4 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Jan 31, 2024Updated 2 years ago
- Prefix-renaming FASTA records really fast.☆17Jun 26, 2024Updated last year
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆73Feb 19, 2019Updated 7 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Jun 10, 2021Updated 4 years ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Sep 19, 2024Updated last year
- ☆17Mar 21, 2023Updated 2 years ago
- ☆36Dec 6, 2017Updated 8 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 2 years ago
- the Generic Genome Browser☆49Apr 10, 2023Updated 2 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Feb 15, 2025Updated last year
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Aug 18, 2018Updated 7 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Feb 4, 2025Updated last year
- ☆11Feb 4, 2026Updated 3 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆180Dec 1, 2023Updated 2 years ago
- A pipeline to identify gene family using mutiple tools and scripts.☆11Aug 22, 2021Updated 4 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Estimate population history parameters from site pattern frequencies.☆12Dec 2, 2025Updated 3 months ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 10 years ago
- SKATE R Utilities☆10Jun 19, 2024Updated last year
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 4 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 7 months ago
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated last month