zouyinstein / hifisrLinks
HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high-fidelity (HiFi) reads or Circular Consensus Sequencing (ccs) data, to a reference genome (i.e., the hypothetical master cycle DNA).
☆10Updated 9 months ago
Alternatives and similar repositories for hifisr
Users that are interested in hifisr are comparing it to the libraries listed below
Sorting:
- ☆16Updated 2 years ago
- ☆11Updated last month
- Scripts to do haplotype analysis on pan genomes.☆20Updated 5 years ago
- ☆29Updated 2 years ago
- ☆15Updated 4 years ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆25Updated 6 years ago
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Updated last year
- ☆24Updated last month
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 7 months ago
- Construct and Analyze the North American Vitis pangenome☆29Updated 5 months ago
- ☆16Updated 2 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Updated 6 years ago
- B73Ab10 genome assembly methods☆16Updated 4 years ago
- Scripts for NGS processing☆17Updated 8 years ago
- A box of genomics tools☆21Updated 5 years ago
- ☆13Updated 4 months ago
- Strand and WGD aware syntenic gene identification☆15Updated 3 months ago
- SINE annotation tool for plant genomes☆18Updated 2 years ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated 2 years ago
- ☆12Updated 2 years ago
- This is code for running Orthofinder -> PAML☆12Updated 9 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 4 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆20Updated 3 months ago
- ☆31Updated 9 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Updated 9 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- The tools are used for displaying hic signal of genome☆24Updated 5 years ago
- ☆27Updated 5 months ago
- Study of TE evolution in a population of genomes☆10Updated 2 years ago