Alternatives and similar repositories for hifisr

Users that are interested in hifisr are comparing it to the libraries listed below

• SunPengChuan / wgdi-example
  ☆17Updated 7 months ago
• YaoZhou89 / WGSc
  ☆15Updated 3 years ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆23Updated last year
• sc-zhang / T2Tools
  T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.
  ☆14Updated 2 months ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆17Updated last year
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• hewm2008 / MingZ
  An ultra-fast gzip file tools
  ☆27Updated last year
• jlanga / smsk_selection
  Snakemake project to predict orthogroups and find patterns of postive selection with orthofinder and fastcodeml
  ☆7Updated 4 years ago
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆19Updated 3 months ago
• caasivfbioinfo / Bol_pangenome
  ☆15Updated last year
• sc-zhang / ALLHiC_extensions
  Some components that speed up and reduce resource cost for original ALLHiC
  ☆14Updated last month
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 6 years ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆23Updated last year
• csh3 / RegCloser
  RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…
  ☆14Updated last year
• XuewenWangUGA / GMATA
  Software GMATA for SSR mining, marker designing, genotyping, plot etc.
  ☆14Updated 11 months ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated 3 weeks ago
• wangzihell / IntroBlocker
  The IntroBlocker ancestry inference algorithm
  ☆14Updated last year
• HuiyangYu / HFKReads
  An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction
  ☆19Updated last year
• Minglc / CisTrans-ECAS
  ☆10Updated last year
• rebeccaserramari / polyploid-potato-assembly
  Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…
  ☆15Updated last year
• yuanw-18 / Allo4D
  This pipeline is used to distinguish allotetraploid subgenomes.
  ☆10Updated last year
• StevenVB12 / Tutorial_pan_genomics
  Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…
  ☆18Updated 2 months ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆24Updated 4 years ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆30Updated 5 months ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆17Updated 2 years ago
• wangziwei08 / LTR-insertion-time-estimation
  ☆16Updated 2 years ago
• tangerzhang / calc_switchErr
  ☆27Updated 3 months ago
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆16Updated 3 years ago
• qunjie-zhang / gfanno
  Gene Family Annotation Workflow
  ☆11Updated last year
• Weikai-47 / Pepper_T2T
  Here, we report telomere-to-telomere (T2T) gap-free genomes for domesticated pepper Capsicum annuum and wild relative Capsicum rhomboideu…
  ☆12Updated last year