HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high-fidelity (HiFi) reads or Circular Consensus Sequencing (ccs) data, to a reference genome (i.e., the hypothetical master cycle DNA).
☆10Jun 14, 2026Updated this week
Alternatives and similar repositories for hifisr
Users that are interested in hifisr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- GWAS analysis process based on EMMAX software☆18Dec 12, 2023Updated 2 years ago
- DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping☆17Nov 23, 2023Updated 2 years ago
- An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads☆28Updated this week
- ☆13Nov 13, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated 2 years ago
- An easy-to-use python package can be used for genomic visual analysis☆22Apr 20, 2024Updated 2 years ago
- Graph-based Sequence Assembly Toolkit☆24May 7, 2026Updated last month
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 10 years ago
- Organellar genome assembly☆30May 22, 2026Updated 3 weeks ago
- Official code repository for the paper READRetro: Natural Product Biosynthesis Planning with Retrieval-Augmented Dual-View Retrosynthesis☆24Jun 8, 2024Updated 2 years ago
- MitoDNA extending assembler from NGS data☆23Mar 19, 2026Updated 2 months ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆21Oct 12, 2025Updated 8 months ago
- ☆15Jan 19, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆13Oct 15, 2024Updated last year
- Cellular Mitochondrial Analysis☆16Oct 25, 2021Updated 4 years ago
- ☆17Jan 13, 2024Updated 2 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- ☆26Dec 15, 2025Updated 6 months ago
- Fitting latent factor mixed models☆13Jun 12, 2020Updated 6 years ago
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆16Dec 18, 2025Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Genomic Annotation in Livestock for positional candidate LOci☆14Feb 26, 2021Updated 5 years ago
- Mitochondrial Genome Assembly☆17Feb 21, 2024Updated 2 years ago
- ☆26Apr 22, 2025Updated last year
- blupADC:An useful tool for animal and plant breeding☆32Nov 22, 2024Updated last year
- ☆11Aug 20, 2019Updated 6 years ago
- An efficient assembly tool for plant mitochondrial genome☆71May 31, 2024Updated 2 years ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 3 years ago
- Genomic Selection using Neural Networks implemented in TensorFlow☆10Aug 22, 2018Updated 7 years ago
- FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation☆31Feb 16, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆38Oct 29, 2025Updated 7 months ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 9 months ago
- Shiu Lab code base for Machine Learning implemented in SciKit-Learn☆13Oct 5, 2021Updated 4 years ago
- ☆11Jan 31, 2018Updated 8 years ago
- Creates Venn diagrams for OrthoMCL output☆17Aug 9, 2017Updated 8 years ago
- Synteny Mapping and Analysis Program☆30Jun 9, 2026Updated last week
- GEFormer is a genome-wide prediction model for genotype-environment interactions based on a deep learning approach designed to predict ma…☆15Jan 15, 2026Updated 5 months ago