repository for code used in analysis of open wild wheat consortium
☆18Nov 23, 2021Updated 4 years ago
Alternatives and similar repositories for owwc
Users that are interested in owwc are comparing it to the libraries listed below
Sorting:
- ☆16Jul 29, 2023Updated 2 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Dec 19, 2023Updated 2 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- ☆24Apr 22, 2025Updated 10 months ago
- a Semi-automated pipeline for assembling T2T genome☆25Oct 16, 2025Updated 4 months ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- A Snakemake-based pipeline for gene mapping in Triticeae.☆11Mar 5, 2022Updated 3 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated last year
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Haplotype-aware assembly of complex regions and small genomes☆15Nov 21, 2025Updated 3 months ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆77Jul 22, 2025Updated 7 months ago
- A haplotype analysis toolkit for natural variation study.☆31Oct 3, 2023Updated 2 years ago
- Gene copy number prediction from k-mer frequencies☆15Jul 29, 2024Updated last year
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- scripts used in Rice Pangenome Projects (Evolution).☆13Oct 29, 2023Updated 2 years ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆15Sep 5, 2024Updated last year
- Customized codes used in Tibetan wheat sequencing project.☆13Oct 18, 2022Updated 3 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Nov 1, 2024Updated last year
- ☆15Aug 22, 2023Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Sep 13, 2024Updated last year
- KmerGO is a user-friendly tool to identify the group-specific sequences on two groups or trait-associated sequences of high throughput se…☆13Mar 6, 2023Updated 2 years ago
- Benchmarking variant calling in polyploids☆15Nov 26, 2021Updated 4 years ago
- An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions☆14Mar 4, 2025Updated last year
- Hapmap-v1☆12Feb 3, 2020Updated 6 years ago
- ☆16Apr 14, 2021Updated 4 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆203Aug 15, 2024Updated last year
- Code to compute the XP-CLR statistic to infer natural selection☆102Jun 13, 2022Updated 3 years ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Apr 29, 2021Updated 4 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- conserved non-coding sequence☆16Feb 21, 2022Updated 4 years ago
- i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.☆17Jun 28, 2024Updated last year
- Regenotyping structural variants through an accurate and efficient force-calling method☆26Nov 28, 2025Updated 3 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆27Nov 6, 2025Updated 3 months ago
- ☆14May 12, 2023Updated 2 years ago