OpenGene / CfdnaPatternLinks
Pattern Recognition for Cell-free DNA
☆59Updated 6 years ago
Alternatives and similar repositories for CfdnaPattern
Users that are interested in CfdnaPattern are comparing it to the libraries listed below
Sorting:
- Query Mutated Reads from a Bam☆26Updated 6 years ago
- Gene fusion detection and visualization☆128Updated 3 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆153Updated 3 years ago
- ☆57Updated 5 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆97Updated 2 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆82Updated 2 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆71Updated 4 years ago
- (No maintenance) Detect gene fusion directly from raw fastq files☆25Updated 7 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆111Updated last year
- A tool to call somatic single nucleotide variants.☆41Updated 9 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberration…☆72Updated 3 years ago
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 6 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- VarDict☆198Updated last year
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- ☆41Updated last year
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆111Updated 6 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆147Updated 3 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆210Updated 5 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 9 months ago