Pattern Recognition for Cell-free DNA
☆59Aug 3, 2018Updated 7 years ago
Alternatives and similar repositories for CfdnaPattern
Users that are interested in CfdnaPattern are comparing it to the libraries listed below
Sorting:
- Query Mutated Reads from a Bam☆26Nov 26, 2018Updated 7 years ago
- (No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated☆24Aug 10, 2017Updated 8 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆157Feb 10, 2022Updated 4 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆213May 14, 2020Updated 5 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆78Jul 22, 2020Updated 5 years ago
- Somatic Variant Call for ctDNA☆12Mar 1, 2016Updated 9 years ago
- Gene fusion detection and visualization☆131Feb 21, 2022Updated 4 years ago
- (No maintenance) Detect gene fusion directly from raw fastq files☆25Aug 13, 2017Updated 8 years ago
- (No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia☆66Jul 18, 2022Updated 3 years ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆126Oct 27, 2023Updated 2 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆37Sep 23, 2017Updated 8 years ago
- Inferring expressed genes by whole-genome sequencing of plasma DNA☆19May 23, 2016Updated 9 years ago
- A fast lossless FASTQ compressor with ultra-high compression ratio☆144May 28, 2025Updated 9 months ago
- awesome-bio-datasets☆240Oct 28, 2017Updated 8 years ago
- BGZF Stream☆13Jul 27, 2023Updated 2 years ago
- Detect and visualize microsatellite instability(MSI) from NGS data☆32Jun 4, 2019Updated 6 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆75Aug 18, 2022Updated 3 years ago
- ☆76Jun 4, 2021Updated 4 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆46Nov 5, 2019Updated 6 years ago
- R package to work with ctDNA sequencing data☆47Feb 20, 2022Updated 4 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 10 months ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆17Jul 19, 2021Updated 4 years ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆49Nov 20, 2023Updated 2 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- Personal Cancer Genome Reporter (PCGR)☆274Oct 7, 2025Updated 4 months ago
- Barcoded Molecular Families☆22Nov 20, 2017Updated 8 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Mar 28, 2023Updated 2 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Oct 18, 2024Updated last year
- wgs_pipeline☆18Dec 3, 2013Updated 12 years ago
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 7 years ago
- annotation database for human genetics, genomics and epigenomics☆19May 15, 2020Updated 5 years ago
- cfDNA analysis workflow☆23Jun 15, 2023Updated 2 years ago
- Lollipop-diagram to visualize genomic mutations☆20Sep 3, 2019Updated 6 years ago
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- Strelka2 germline and somatic small variant caller☆390Dec 29, 2021Updated 4 years ago
- myVCF: a web-based platform for target and exome mutations data management☆21Apr 13, 2021Updated 4 years ago