Workflow for preprocessing cfDNA samples.
☆12Nov 11, 2024Updated last year
Alternatives and similar repositories for cfDNA-UniFlow
Users that are interested in cfDNA-UniFlow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆42Feb 14, 2026Updated 2 months ago
- ☆15Oct 16, 2025Updated 6 months ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- cfDNA analysis workflow☆23Jun 15, 2023Updated 2 years ago
- This is a prototype version of the Kedro spaceflights tutorial that utilises the modular pipelines pattern.☆11Mar 2, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at…☆15May 2, 2023Updated 2 years ago
- ☆14Jul 22, 2025Updated 9 months ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆80Aug 18, 2022Updated 3 years ago
- ScaleBio Single-cell RNA Nextflow Workflow☆40Jul 2, 2025Updated 9 months ago
- FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.☆37Apr 23, 2026Updated last week
- Merging paired-end reads and removing adapters☆46Nov 7, 2025Updated 5 months ago
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 7 years ago
- Reference genome resource manager☆74Mar 6, 2026Updated last month
- ☆77Jun 4, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- Pyranges: a Python framework for ultrafast sequence interval operations☆54Apr 21, 2026Updated last week
- Miscellaneous tools for data analysis and scientific computing☆45Nov 3, 2025Updated 5 months ago
- A method to improve mappings on circular genomes, using the BWA mapper☆10Mar 4, 2022Updated 4 years ago
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆33Nov 22, 2024Updated last year
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆19Updated this week
- Nextflow hackathon 2017 projects☆10Sep 28, 2017Updated 8 years ago
- ☆12Oct 19, 2023Updated 2 years ago
- Bioinformatics tools for Python☆25Feb 11, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 7 years ago
- ☆51Jan 4, 2023Updated 3 years ago
- Code for performing PCA followed by CCA☆18Dec 2, 2018Updated 7 years ago
- This is *NOT* the official repository of samtools.☆49Jun 9, 2017Updated 8 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Mar 24, 2019Updated 7 years ago
- Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆20Apr 2, 2026Updated 3 weeks ago
- Exploration, clustering, visualization and classification of DNA damage patterns☆19Jan 15, 2021Updated 5 years ago
- ☆16Sep 8, 2024Updated last year
- ☆48Apr 18, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- An analysis pipeline for Nanostring nCounter expression data.☆18Jan 30, 2026Updated 3 months ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated 11 months ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆15Mar 13, 2026Updated last month
- sci palettes for matplotlib/seaborn☆10Feb 14, 2022Updated 4 years ago
- Maximum a posteriori estimate of contamination for ancient samples☆23Nov 4, 2025Updated 5 months ago
- plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style☆17Dec 19, 2025Updated 4 months ago
- ☆13Sep 18, 2018Updated 7 years ago