reiterlab / ctdnaLinks
Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding
☆13Updated 5 years ago
Alternatives and similar repositories for ctdna
Users that are interested in ctdna are comparing it to the libraries listed below
Sorting:
- Location of public benchmarking; primarily final results☆18Updated 11 months ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Updated 2 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 8 years ago
- ☆22Updated 11 months ago
- ☆23Updated 5 months ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- ☆29Updated 4 years ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- ☆23Updated 2 weeks ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- ☆16Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- Deep learning-based structural variant filtering method☆39Updated 2 years ago
- Sample Contamination Estimate from VCF☆20Updated last year
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- ☆13Updated 4 months ago
- ☆20Updated 2 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated 3 weeks ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- ☆24Updated last year