reiterlab / ctdnaLinks
Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding
☆13Updated 4 years ago
Alternatives and similar repositories for ctdna
Users that are interested in ctdna are comparing it to the libraries listed below
Sorting:
- ☆23Updated 5 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆14Updated 2 years ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18Updated last year
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Updated 10 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated 2 weeks ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- A tool for timing complex copy number gains in cancer.☆19Updated last month
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 weeks ago
- Aggregation and analyses of rare CNVs across diseases☆15Updated 2 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆21Updated 2 weeks ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Deep learning-based structural variant filtering method☆39Updated 2 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- ☆22Updated 11 months ago
- ☆23Updated last month
- ☆40Updated 6 months ago
- ☆18Updated 5 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Updated 11 months ago
- ☆13Updated 3 months ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Updated last year
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- analysis pipeline for CODEC data☆12Updated 2 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago