Alternatives and similar repositories for ctdna

Users that are interested in ctdna are comparing it to the libraries listed below

• skandlab / SMuRF
  ☆22Updated 5 months ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 5 months ago
• talkowski-lab / rCNV2
  Aggregation and analyses of rare CNVs across diseases
  ☆14Updated 2 years ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆18Updated last year
• VanLoo-lab / gritic
  A tool for timing complex copy number gains in cancer.
  ☆17Updated last week
• steverozen / mSigAct
  ☆13Updated 2 weeks ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆18Updated 2 years ago
• broadinstitute / CODECsuite
  analysis pipeline for CODEC data
  ☆11Updated last month
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆29Updated last year
• viq854 / lichee
  Multi-sample cancer phylogeny reconstruction
  ☆35Updated 7 years ago
• mazzalab-ieo / recallme
  Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer
  ☆13Updated last year
• PacificBiosciences / hg002-ccs
  ☆15Updated 3 years ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆18Updated this week
• gagneurlab / splicemap
  ☆21Updated 9 months ago
• KChen-lab / Texomer
  Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data
  ☆21Updated 4 years ago
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆13Updated 3 years ago
• PacificBiosciences / pb-human-wgs-workflow-wdl
  ☆12Updated last year
• TheJacksonLaboratory / pyBedGraph
  A Python package for fast operations on 1-dimensional genomic signal tracks
  ☆24Updated 5 years ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• hammerlab / awesome-clonality
  A curated list of awesome clonality and tumor heterogeneity resources
  ☆15Updated 6 years ago
• gagneurlab / FRASER-analysis
  Accompanying analysis code for the FRASER manuscript
  ☆26Updated 4 years ago
• stjude / cis-x
  Search for activating regulatory variants in the tumor genome
  ☆14Updated 3 months ago
• mcmero / SVclone
  A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.
  ☆41Updated 3 months ago
• QingliGuo / FFPEsig
  Codes and Data for FFPEsig manuscript
  ☆17Updated last year
• HurlesGroupSanger / indelible
  Structural Variation breakpoint discovery via adaptive learning
  ☆15Updated 2 years ago
• gagneurlab / absplice
  ☆39Updated 2 weeks ago
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 8 years ago
• shahcompbio / timescape
  Visualization tool for temporal clonal evolution.
  ☆17Updated 5 years ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 3 years ago