niu-lab / msisensor-ctLinks
Microsatellite instability (MSI) detection for cfDNA samples.
☆20Updated 4 years ago
Alternatives and similar repositories for msisensor-ct
Users that are interested in msisensor-ct are comparing it to the libraries listed below
Sorting:
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- ☆54Updated 2 years ago
- QDNAseq package for Bioconductor☆53Updated last year
- Read level DNA methylation analysis of bisulfite converted sequencing data☆18Updated 4 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- ☆26Updated last year
- ⛏ HLA predictions from NGS shotgun data☆55Updated 5 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Updated 5 years ago
- CN-Learn☆30Updated 5 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated last year
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 8 months ago
- CNV detection tool for targeted NGS panel data☆16Updated 3 years ago
- Fork of the Polysolver project☆33Updated 5 years ago
- ☆46Updated 6 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated last month
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 3 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- A new tool to infer sex from massively parallel sequencing data.☆17Updated 6 months ago
- Long read to rMATS☆32Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- A variant caller for the GBA gene using WGS data☆23Updated last year