Microsatellite instability (MSI) detection for cfDNA samples.
☆20Feb 20, 2021Updated 5 years ago
Alternatives and similar repositories for msisensor-ct
Users that are interested in msisensor-ct are comparing it to the libraries listed below
Sorting:
- Microsatellite instability (MSI) detection for tumor only data.☆113Apr 23, 2024Updated last year
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Jan 6, 2021Updated 5 years ago
- ☆36Mar 16, 2021Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Dec 14, 2021Updated 4 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 11 months ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Oct 5, 2019Updated 6 years ago
- ☆11Jun 14, 2023Updated 2 years ago
- ☆120Sep 5, 2023Updated 2 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated 9 months ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆76Aug 18, 2022Updated 3 years ago
- ☆55Jan 11, 2023Updated 3 years ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- ☆16Oct 17, 2024Updated last year
- ☆43Feb 9, 2024Updated 2 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆36Oct 14, 2025Updated 4 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- Somatic copy variant caller (CNV) for next generation sequencing☆75Sep 12, 2024Updated last year
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- Utility functions for FACETS☆39Oct 24, 2025Updated 4 months ago
- TransVar - multiway annotator for precision medicine☆126Apr 19, 2023Updated 2 years ago
- Software program for checking sample matching for NGS data☆137Jun 20, 2024Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49May 7, 2019Updated 6 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆21Oct 25, 2023Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- v2.x of the microassembly based somatic variant caller☆23Jul 16, 2025Updated 7 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆37Sep 16, 2025Updated 5 months ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- Support Vector Structural Variation Genotyper☆58May 29, 2020Updated 5 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- a lightweight bam file depth statistical tool☆161Sep 13, 2024Updated last year
- Helper scripts for biological data processing from Sentieon☆64Jan 27, 2026Updated last month
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- ☆25Jan 18, 2022Updated 4 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 2 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year