Microsatellite instability (MSI) detection for cfDNA samples.
☆21Feb 20, 2021Updated 5 years ago
Alternatives and similar repositories for msisensor-ct
Users that are interested in msisensor-ct are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microsatellite instability (MSI) detection for tumor only data.☆116Apr 23, 2024Updated 2 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- ☆36Mar 16, 2021Updated 5 years ago
- data repo for fusions found in human genomes and transcriptomes☆10Jan 21, 2024Updated 2 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆117Apr 2, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- ☆128Sep 5, 2023Updated 3 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆19Oct 5, 2019Updated 7 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆82Aug 18, 2022Updated 4 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated last year
- Assign gene names to regions in a BED file☆25May 3, 2023Updated 3 years ago
- ☆57Jan 11, 2023Updated 3 years ago
- ☆11Jun 14, 2023Updated 3 years ago
- SV genotyping with long reads☆41Jul 3, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆43Feb 9, 2024Updated 2 years ago
- Multi-nucleotide Variation Annotation Corrector☆11Dec 13, 2022Updated 3 years ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 9 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- CNV detection tool for targeted NGS panel data☆17Feb 28, 2022Updated 4 years ago
- ☆25Jan 18, 2022Updated 4 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆39Sep 16, 2025Updated last year
- Software program for checking sample matching for NGS data☆144Jun 20, 2024Updated 2 years ago
- Structural variant VCF annotation, filtering, duplicate removal and comparison☆38Sep 3, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Jun 6, 2024Updated 2 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆23Oct 25, 2023Updated 2 years ago
- ☆12Oct 19, 2021Updated 4 years ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 6 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Sep 28, 2022Updated 4 years ago
- ☆17Oct 17, 2024Updated last year
- a lightweight bam file depth statistical tool☆163Jul 2, 2026Updated 3 months ago
- Support Vector Structural Variation Genotyper☆59May 29, 2020Updated 6 years ago
- Mutational signature analysis for low statistics SNV data☆67Aug 7, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- v2.x of the microassembly based somatic variant caller☆29Sep 9, 2026Updated last month
- Helper scripts for biological data processing from Sentieon☆65Apr 3, 2026Updated 6 months ago
- Somatic copy variant caller (CNV) for next generation sequencing☆80Sep 12, 2024Updated 2 years ago
- Tools for working with genomic and high throughput sequencing data.☆374Updated this week
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year