R package to work with ctDNA sequencing data
☆47Feb 20, 2022Updated 4 years ago
Alternatives and similar repositories for ctDNAtools
Users that are interested in ctDNAtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆76Jun 4, 2021Updated 4 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆78Aug 18, 2022Updated 3 years ago
- TNER: Tri-Nucleotide Error Reducer for ctDNA detection☆21Aug 23, 2019Updated 6 years ago
- ☆26Dec 4, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A simplified pipeline for ctDNA sequencing data analysis☆37Sep 23, 2017Updated 8 years ago
- ☆11May 21, 2024Updated last year
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- Scripts for analyses in the Griffin manuscript☆12Dec 14, 2022Updated 3 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆78Jul 22, 2020Updated 5 years ago
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆41Feb 14, 2026Updated last month
- ☆26Aug 8, 2024Updated last year
- ☆10Oct 18, 2021Updated 4 years ago
- cfSNV: An R tool of sensitively detecting tumor mutations from cell-free DNA in blood☆14Apr 29, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆11May 26, 2023Updated 2 years ago
- ☆31Mar 5, 2024Updated 2 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- WES HLA Typing based on multiple alternative tools☆18Mar 8, 2021Updated 5 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆205Mar 20, 2024Updated 2 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆21Oct 25, 2023Updated 2 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Apr 20, 2021Updated 4 years ago
- Tools and Data related to Enzymatic Methylation Sequencing☆34Apr 2, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Codes and Data for FFPEsig manuscript☆17Jan 17, 2024Updated 2 years ago
- ☆16Oct 17, 2024Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- Tools for working with genomic and high throughput sequencing data.☆360Updated this week
- NiPTUNE. A Python library for NIPT analyses.☆11Nov 22, 2021Updated 4 years ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆44Jul 28, 2021Updated 4 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆22May 8, 2017Updated 8 years ago
- Multi-nucleotide variants (MNVs) in gnomAD 2.1☆12Feb 27, 2026Updated last month
- Model files for Sentieon variant callers☆16Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Prioritizing Cancer Driver Genes Using Genomics Data☆17Dec 22, 2025Updated 3 months ago
- ☆36Mar 16, 2021Updated 5 years ago
- ☆11Oct 19, 2021Updated 4 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆29Jul 27, 2023Updated 2 years ago
- PGxPOP☆17Jan 25, 2023Updated 3 years ago
- Pattern Recognition for Cell-free DNA☆59Aug 3, 2018Updated 7 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Apr 9, 2020Updated 6 years ago