cfDNA analysis workflow
☆23Jun 15, 2023Updated 3 years ago
Alternatives and similar repositories for cfDNA
Users that are interested in cfDNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆80Jul 22, 2020Updated 6 years ago
- ☆17Oct 16, 2025Updated last year
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is the standard MPRA pipeline of the IG…☆17Oct 12, 2026Updated 3 weeks ago
- ☆20Nov 30, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆13Aug 4, 2020Updated 6 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆82Aug 18, 2022Updated 4 years ago
- cfDNA cell type of origin estimation☆36Oct 19, 2023Updated 3 years ago
- ☆80Jun 4, 2021Updated 5 years ago
- ☆33Mar 5, 2024Updated 2 years ago
- DMRs detection, annotation and analysis☆10Jan 19, 2026Updated 9 months ago
- ☆16Jan 10, 2022Updated 4 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Mar 27, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 months ago
- Profiling of transcription factor binding sites in cell-free DNA☆27Apr 9, 2020Updated 6 years ago
- ☆12Nov 28, 2018Updated 7 years ago
- Workflow for preprocessing cfDNA samples.☆14Nov 11, 2024Updated last year
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Using RNA-Seq data to improve microRNA target prediction accuracy in animals☆11Feb 15, 2026Updated 8 months ago
- R package for CRAG☆12Feb 17, 2025Updated last year
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆15Aug 26, 2026Updated 2 months ago
- ☆10Sep 14, 2023Updated 3 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Sniphles is a read-based phasing approach for phased variant calling of structural variants.☆12Oct 14, 2020Updated 6 years ago
- ☆18Aug 29, 2025Updated last year
- Find locations of k-mers☆13Dec 6, 2025Updated 10 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆39Sep 16, 2025Updated last year
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Analyse enhancer strength based on MPRA experiments.☆13Nov 12, 2020Updated 5 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆40Jun 17, 2026Updated 4 months ago
- commandline tool for fast computation and correction of GC biases in WGS DNA datasets from liquid biopsy samples taking the fragment leng…☆10Nov 20, 2025Updated 11 months ago
- A fast, multithreaded reader and writer of bigWig and figwig files.☆27Updated this week
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 3 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆32Jul 27, 2023Updated 3 years ago