xjtu-omics / msisensor-proLinks
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
☆115Updated 8 months ago
Alternatives and similar repositories for msisensor-pro
Users that are interested in msisensor-pro are comparing it to the libraries listed below
Sorting:
- Microsatellite instability (MSI) detection for tumor only data.☆112Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- ☆117Updated 2 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- ☆49Updated 2 years ago
- HiC uniform processing pipeline☆62Updated 2 years ago
- ☆60Updated 5 months ago
- Allele-specific alignment sorting☆61Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆75Updated 3 years ago
- Reference data: BED files, genes, transcripts, variations.☆88Updated 8 years ago
- Tumor Mutational Burden☆63Updated 4 months ago
- ☆43Updated last year
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆74Updated 3 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆83Updated 4 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated 2 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 3 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆91Updated 3 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆113Updated 4 years ago
- ☆82Updated 8 months ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- WisecondorX — An evolved WISECONDOR☆108Updated 3 weeks ago
- Quantification of transposable element expression using RNA-seq☆77Updated last year
- ☆64Updated 3 months ago