xjtu-omics / msisensor-proLinks
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
☆113Updated 7 months ago
Alternatives and similar repositories for msisensor-pro
Users that are interested in msisensor-pro are comparing it to the libraries listed below
Sorting:
- Microsatellite instability (MSI) detection for tumor only data.☆111Updated last year
- ☆59Updated 3 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 3 months ago
- HiC uniform processing pipeline☆61Updated 2 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- ☆49Updated 2 years ago
- Tumor Mutational Burden☆63Updated 3 months ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆74Updated 3 years ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 3 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 2 weeks ago
- Microsatellite Analysis for Normal-Tumor InStability☆76Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆132Updated last year
- Allele-specific alignment sorting☆60Updated 2 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆91Updated 3 years ago
- Reference data: BED files, genes, transcripts, variations.☆88Updated 7 years ago
- ☆117Updated 2 years ago
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆76Updated 2 years ago
- ☆43Updated last year
- xHLA: Fast and accurate HLA typing from short read sequence data☆113Updated 2 years ago
- ☆72Updated 2 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 3 weeks ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆81Updated 4 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆113Updated 4 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- ☆80Updated 6 months ago