Microsatellite Instability (MSI) detection using high-throughput sequencing data.
☆117Apr 2, 2025Updated last year
Alternatives and similar repositories for msisensor-pro
Users that are interested in msisensor-pro are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microsatellite instability (MSI) detection for tumor only data.☆116Apr 23, 2024Updated 2 years ago
- MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data☆25Feb 28, 2025Updated last year
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- Gene fusion detection and visualization☆133Feb 21, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ASCAT R package☆205Feb 12, 2026Updated 8 months ago
- Tumor Mutational Burden☆65Mar 17, 2026Updated 6 months ago
- ☆43Feb 9, 2024Updated 2 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆79Jul 14, 2022Updated 4 years ago
- ☆18Aug 22, 2021Updated 5 years ago
- ☆128Sep 5, 2023Updated 3 years ago
- Detect and visualize microsatellite instability(MSI) from NGS data☆33Jun 4, 2019Updated 7 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆21Feb 20, 2021Updated 5 years ago
- ☆19Feb 20, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆189Oct 5, 2026Updated last week
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆166Feb 12, 2026Updated 8 months ago
- Annotation and Ranking of Structural Variation☆310Aug 11, 2026Updated 2 months ago
- Software program for checking sample matching for NGS data☆144Jun 20, 2024Updated 2 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆75Jun 26, 2023Updated 3 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆118Sep 2, 2024Updated 2 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆19Jun 29, 2021Updated 5 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆39Sep 16, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Clonality inference in multiple tumor samples using phylogeny☆14Sep 12, 2017Updated 9 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆280Sep 21, 2025Updated last year
- Somatic copy variant caller (CNV) for next generation sequencing☆80Sep 12, 2024Updated 2 years ago
- 肿瘤突变负荷学习笔记（tumor mutation burden）☆17Dec 10, 2019Updated 6 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆62Jul 27, 2026Updated 2 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆178Aug 22, 2024Updated 2 years ago
- Structural variant and indel caller for mapped sequencing data☆467Oct 11, 2025Updated last year
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆217Jun 23, 2026Updated 3 months ago
- Personal Cancer Genome Reporter (PCGR)☆284Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- cfSNV: An R tool of sensitively detecting tumor mutations from cell-free DNA in blood☆15Apr 29, 2023Updated 3 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14May 28, 2019Updated 7 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆346Feb 22, 2026Updated 7 months ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆126Aug 19, 2020Updated 6 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆286May 21, 2025Updated last year
- A simplified pipeline for ctDNA sequencing data analysis☆38Sep 23, 2017Updated 9 years ago